Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02857 ATGGCAGTTGCTGGTGTGCATAATGTGACTGTGCTCGAATCTACTTTCCTAAGGGAATCCCATTCCCAGCCATCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCACCTTCGGTCTTGCAAATGTGGCGAGAGATTGAAGATGAGCAGGTAGTCAGACAAGTTCAAGGAAGACCCGGGGAGGTACAAAGGAGTGATGGGTTGGTTGTGGACCTCTCACAGGAAAATTTGCCCGACAGCAGCAACCAGAGGGAAGAGCATATGATAGAGGATGCAGTTTTGGGTGAGAATGATTCTGAAACCTGGTCACAAAGTCAGAATGAGTTCCATGATGAACAGGAGGAATTAAACAATTCTAGCCGTGAAAACTCCTCTGATTTTGGAGTAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAATGGATGAATAGTGGTTCTAGGGATCATGCATCAAATCATTCCCAAGGAAATAATTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGGGTGAGTGCCATAAGGGAGTGGGTACAGATGAGCAGCCAGCAGAGAGGCGTTTCTTCTGGGGAAAGTAGGGAAGAACAATCTTCTGAAATTGGTACCCAAATCGAATGCGTTCGTGATGGATTTGTTGTTAATCAGAATGAGGGCCAACACCAAACTGAGCATACACGGCGGGGAATCCGTAAATTACGTGGTCGACAGGTGTTTCTTGATATGCTTAAGAAAGCTGAGATGGAAAGGCAAAGAGAAGTTCAAGAATTGTTGAACCATCGAGTTGTATCTCATTTTCCCCATCGCAATCGCATACAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGACAGATCGATTGATAATAACAAGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAGCAGACTGTATCAGGTCTAAGGGAAGGTTTCGTTTTTAGAAAGGACAATTTTGGTTGCAGTCAAGCAACCAGTAACACATCTGATACCTCATCTGAGGACGATATTGATGTTAATACTATTGAAGAAACTGGAGCTAGCAGCTCACAAGCAGTCCCAACTGTACATTCTCAACAATCTGAACCTAATAACAGGGTAAGTGACGGACTTGAGATATCAGGTGATCAGATTTGTTCACAAGGAACCATTTGTGAGAATTTAGATCGGCAAGGCTCTTCTGCTCATGTGGAAACAAGAGATTTGGAATCATCTTCTAGTACCAGGTTTGAAAGAGAAGATGGCACTGGAGGAAATGTTGATACGATGCCAACTGAAGATCCTTCTAATGGCCTTACTCAACCAAGCTTGCAAATTGAAGATACAGACCAAGGCAATATGCATGAGTTAAGTGAGGTACATACTGAGCAATCTCAGCGGGGTGATATAATTAATGATGAAAGCGATATAGTTGATGATGTAGATTTGATTGAATCTATTGCTCTGGAAGGGGAGCAACAGGAAGAAGTTATTATTGAAAATGACGGAAGTGTCTGGCATCAAAGTGTGGATGATAATCAGCTCGGTAGCACAACAAATGAATGGCCCCAAAACATATTGGGAGGTGAAGATGGAGAAAATTCTCGTATGCAGGAGCAAGAAGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAAGCTGTGGAAATTTGGTTAGGAGGACCATCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGAAGATGACAATGTATACAGTGTTGAGCTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTGGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTAATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAATGGGAGCTGCAAGAGACAACCCCTTCCCCCTTGGCAGAACAAGTCTCACGGCAACACAGTAGGGATCCAATAGTTAGTCCTCAGGCTACTGTTAATAGCTCACTTGACCGACCCTTGCCACCAACACCTCCGCCTCAGCCTTTATGGGATCGGCACTCACGTCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCTTAGGAATTGTGCGTTCATTTGCAGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAACTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTAAATCGCTCAACTGGTTCATCAGatgaccaagtggaattcatcacaggaatacatgacggtgtttcaacagacgataaatctaaatgGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCTAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGAGCTTATTCTATACAATAG 2550 0.4271 MAVAGVHNVTVLESTFLRESHSQPSGRQGDGGRGGTRSPSVLQMWREIEDEQVVRQVQGRPGEVQRSDGLVVDLSQENLPDSSNQREEHMIEDAVLGENDSETWSQSQNEFHDEQEELNNSSRENSSDFGVVERERVRQIFREWMNSGSRDHASNHSQGNNSRGEWLGETEQERVSAIREWVQMSSQQRGVSSGESREEQSSEIGTQIECVRDGFVVNQNEGQHQTEHTRRGIRKLRGRQVFLDMLKKAEMERQREVQELLNHRVVSHFPHRNRIQALLRGRFLRNDRSIDNNKSTSIAESELGLLRQKQTVSGLREGFVFRKDNFGCSQATSNTSDTSSEDDIDVNTIEETGASSSQAVPTVHSQQSEPNNRVSDGLEISGDQICSQGTICENLDRQGSSAHVETRDLESSSSTRFEREDGTGGNVDTMPTEDPSNGLTQPSLQIEDTDQGNMHELSEVHTEQSQRGDIINDESDIVDDVDLIESIALEGEQQEEVIIENDGSVWHQSVDDNQLGSTTNEWPQNILGGEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLGSSFRESLDQLIQSYVERQGHAHVEWELQETTPSPLAEQVSRQHSRDPIVSPQATVNSSLDRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSDDQVEFITGIHDGVSTDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLLQSRRKCPMCQAPVVEVIRAYSIQ 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02857 849 MobiDBLite consensus disorder prediction 16 42 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 56 87 - -
Gma13g02857 849 SUPERFAMILY RING/U-box 796 842 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 400 423 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 352 379 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 633 684 - -
Gma13g02857 849 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 849 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 107 121 - -
Gma13g02857 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 847 IPR013083 -
Gma13g02857 849 MobiDBLite consensus disorder prediction 148 170 - -
Gma13g02857 849 Coils Coil 717 744 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 635 664 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 397 444 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 429 444 - -
Gma13g02857 849 PANTHER PROTEIN, PUTATIVE-RELATED 1 849 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 185 204 - -
Gma13g02857 849 ProSiteProfiles Zinc finger RING-type profile. 797 836 IPR001841 -
Gma13g02857 849 CDD mRING-HC-C3HC5_NEU1 797 835 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 99 131 - -
Gma13g02857 849 MobiDBLite consensus disorder prediction 148 166 - -
Gma13g02857 849 Pfam Zinc finger, C3HC4 type (RING finger) 794 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02857 Gma-Chr13 43083615 43089141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02857 797 843 C3H Transcription Factor Family AT3G06140 38.298 6.25e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02857 - - gmx:100803851 1588.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02857 13 43083615 43089141 Gma13g02857 13 43083615 43089141 ECH
Gma13g02857 13 43083615 43089141 Gma12g01692 12 37365299 37370516 ECH
Gma13g02857 13 43083615 43089141 Gma12g01692 12 37365299 37370516 GST
Gma13g02857 13 43083615 43089141 Gma12g00734 12 6625730 6631961 PCT
Gma13g02857 13 43083615 43089141 Gma11g01573 11 16890714 16896478 PCT
Gma12g00734 12 6625730 6631961 Gma13g02857 13 43083615 43089141 PCT
Gma11g01573 11 16890714 16896478 Gma13g02857 13 43083615 43089141 PCT