Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02853 ATGGCGGAGGACCGGAGTGAGGCGAGTGATTACAGTTCGGAGGACGAAGGAACCGAAGATTACAGGCGTGGAGGGTACCATGCGGTTCGGATTGGTGACACTTTCAAGAATGGGAGCTATGTGGTGCAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTTTGGCTCGCTTGGGACACTCACAAATCGCGATTTGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAAGCGGCAATGGATGAAATAAAGATTCTTAAACAAATTGCTGACGGGGATCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCAGGACCTAATGGCCAACATGTTTGTATGGTTTTTGAATTCCTTGGGGATAATCTTCTCACACTTATCAAGTATAGTGATTATCGAGGGGTTCCCCTTCCCATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCTTGCTTTTGTCTCCAATCGATCCATCTAAGGATCCTAGAAAATTAGGCATTCCACTTATCCTTCCAAACACGAAGGATAAGACTGTGACCAAGAATGGGGCAACAATAGCAAATAAAAGTTTGAATGGAGATCTGACCAAGAATCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCTGCTCAAAGCTGTGCTGGGAGGGAAAATGCTGAGGAAGCTGAGGAGGATTCCAAAGCATCTGATGAGCAAGATGATTGTAGTAATGATGTGAAACCTAGTGTAGAATCTGGTGAAGTTAAACCTAATAGTCCTGTGAGGAAAGATGAATCAACAAAGACTTCTGAAAATAAAGATATTCCACAAGGAAGTCATGGTAATAGGAGAGGTAGCCGCTCTACAAGAAAGAAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTACTTCTTGGATCTAAATATTCAACTCCAGCAGATCTGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCATCTGGTGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGACGCTATTCCCGAGATTTTTTTAATAGATATGGCGATTTGAGGCACATTCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGACGGAGAAGTATGATTTCAGTGAACAAGAAGCAAATAACATGACCGACTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACTGCTGCTCAATGCCTTCAGCATCCTTGGTTCAGTGCAGGTCCCTTCACTCTCGAGCCCTCATTGACTGCTGTGAAGCAAGATGATGCTATTGAAGGGGAAATATTTGAAAAAATGCAGAGGGAAAAGGCTGAGCAGGAGGCTGTGGAAGTTGGCATGGGGAATATGGCCATAGATGGAAATCCAAAGCCACTCAAAGAGTTCCAATCTATGAAGCCATCAGAATAG 1641 0.429 MAEDRSEASDYSSEDEGTEDYRRGGYHAVRIGDTFKNGSYVVQSKLGWGHFSTVWLAWDTHKSRFVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKLGIPLILPNTKDKTVTKNGATIANKSLNGDLTKNQKKKLRKKAKKAAQSCAGRENAEEAEEDSKASDEQDDCSNDVKPSVESGEVKPNSPVRKDESTKTSENKDIPQGSHGNRRGSRSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELASGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLTEKYDFSEQEANNMTDFLLPLLDFVPEKRPTAAQCLQHPWFSAGPFTLEPSLTAVKQDDAIEGEIFEKMQREKAEQEAVEVGMGNMAIDGNPKPLKEFQSMKPSE 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02853 546 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02853 546 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Gma13g02853 546 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02853 546 SUPERFAMILY Protein kinase-like (PK-like) 35 491 IPR011009 -
Gma13g02853 546 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 543 - -
Gma13g02853 546 CDD STKc_SRPK 29 482 - -
Gma13g02853 546 MobiDBLite consensus disorder prediction 208 310 - -
Gma13g02853 546 MobiDBLite consensus disorder prediction 1 20 - -
Gma13g02853 546 Gene3D Transferase(Phosphotransferase) domain 1 123 483 - -
Gma13g02853 546 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Gma13g02853 546 Pfam Protein kinase domain 319 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02853 546 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02853 546 PANTHER SERINE KINASE-LIKE PROTEIN 8 543 - -
Gma13g02853 546 MobiDBLite consensus disorder prediction 278 292 - -
Gma13g02853 546 MobiDBLite consensus disorder prediction 525 546 - -
Gma13g02853 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02853 Gma-Chr13 43028151 43031786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02853 6 534 EF-hand Containing Proteins AT5G22840 70.677 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gma13g02853 Pkinase 8.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02853 K08832 - gmx:100809984 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02853 13 43028151 43031786 Gma13g02853 13 43028151 43031786 ECH
Gma13g02853 13 43028151 43031786 Gma12g01698 12 37482335 37485966 GST
Gma13g02853 13 43028151 43031786 Gma12g00745 12 6780495 6784789 PCT
Gma12g00745 12 6780495 6784789 Gma13g02853 13 43028151 43031786 PCT