Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02845 ATGGAACCTCCTGTCGTGAGATCCAGGGGCCGCCCACGCAAACGGAGGAGAGAAGACGAAGCAACCGTCACTGGTGACGCGAAAACGCTTCCCGAGGCAAAGAAGACGACGCCGGTTGCATTGATTGGACGATACGTGCTAAAAGAGTTTCGAAGAAACACGGTTCTTCTAGGCAAAGTCGCGCGTTATGTTAGTGGACTGTACAGAGTCGTATATGAGAGTGGCGGTTTCGAGGATTTAGATAGCAACGAGATTCGTAGGATACTTCTCCTTGATAGTTATTTCGACGACGATTTGATTCGGAGGAAGGTTGAATTGGAGGAATCGGTGTTGCCGAAGATCACAGCAGAGGAACCGGAGAAAGGTTCGAGCGAATTGCAAGGTGAATTATCGGTTGACAATGAAGAGGAACGAGCTGAGACGGATGATGATGAGGCCAGGGATTCGAGTTCCGGTGCGGAAATGCCGGAAAAGGCGATACCGTCGCCGCTGATGCTGCCGCCGTCTTCCGGAACAATTGGCGTGCCGGAACCGTGTGTTTTGAATCTCTTTTCGGTTTACGGATTTTTAAGATCGTTTAGCATTCGCCTGTTTCTTAGTCCGTTTACTTTGGACGAGTTTGTTGGTGCTTTGAACTGTAAAGTTTCGAATGCGTTGCTTGATGCAATTCACGTTTCGCTGATGCGTGTTTTGAAACGTCACCTTGAAAACATTTCACCAGATGGCTCGCGGCCTGCAACAAAATGCCTTAGGTGCAGTGATTGGAGTTTGGTTGATGCTTTGACTTGGCCTGTTTTTGTGTTTCAGTATTTAGCAATTTTTGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGACGAAATCTTTTATGGCGAGTATTATTTATTGCCTGCAAGTAGGAAATTGACGATATTGCAAATTCTCTGTGATGAAGTTTTGGCGTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATCATGATAATGAAGATTGCCTTCCTGCTGAAAATGGGCCTAGAAGAGTCCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATGCTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGAGGAGGATGATGTTGATGGCAATGGAGATGAATGTCGCTTGTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCAGAAGGGGCATGGTATTGTCCGGAGTGCAAAATAGATATGATTGGGCCTACTATTGCACGGGGAACATCACTTAAAGGGGCTGAAGTATTCGGAAAGGATTTGTATGGGCAAGTTTTCATGAGTACTTGCAACCACTTACTGGTGCTCAATGTCAACAGTGATGGCTTTTGTCTTAAATACTACAATCAGAATGACATACCTAGAGTTCTCCAAGTCCTTTATGCATCTGAGCAACATAGACCTATATACAATGGTATTTGCATGGCGATGTTAGAATATTGGAATATTTCAGAAAAGTTCTTACCCATTTGTGTCAGTAGACTAACTCCTATGGTCGAAGAAGAGCATAAAGCTGTTAGTTCGGTGAAGGAAGAATACAGTTTAATGTTTGGGAATGGGATTTGTGGTGATAATTTGGTGCCATCTCTTGATGCTTCATTGGTTACAACTCGAAGTCCTGCTCCTGGAAGCAGTGGCAATGCAAGAACTACTGTGAATCTGAAGCTTAATGAGGAAACTGCAATGGATTCGACTGTTTCAACTGTTAACCATCATCACTCTGACCCAAAGTGCCAAAATTCTGTTAATAGGTCAGCTGCAGTAAGCCCTGTCAAGTGCTCCTTGGTAAGCAGACAATTTAATAATTATGGGCACGCAAATGACGTAGGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGCGACCAATCTGGTTTTGGAAAGTGCAAAGGCAGTTTAACTAATGATTTTGTGTACATGGGTTGCTCCTATAAACCACAGTCATATATTAATTACTATATGCATGGTGATGTTGCTGCGTCTGCTGCTGCTAACCTGGCCGTTCTTTCTTCAGAGGATTCTAGATCAGAAGGTCATGTGTCTGGCAACTTGGGGAAAGCAACATCTGGAAACACTTATTTGCTAGCAAAAGCATTCTCCCAAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCATTTCTTGCAAAGCCTCTGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATAAGTGCCACCAAAAGTGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATCATCCCTAGCATTGCAACATATGTTATGTATATGGAGGAAAGTTTACGTGGCTTAATAGTTGGACCCTTTCTGAGTGAATGTTATAGAAAGCATTGGCGTAAACAAGTTGAACGAGCCAAATCATTTAGTGATATAAAGCCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGAGACTGGGTGAAGTTGATGGATGATTGGTTGGCTGAATTTTCTACAATGCAAAGTGCTACATGTACTCTTGGAACAACACAAAAACGTGCAACTTGTGGGAAGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGTTGGTGGTTGTCAGGAAAATTTTGCATGGTGGCATGGTGGGAAATTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGTAAAAAAAGGAGCCCGCCAAGGTGGTTTGAGGAAAATTTCGGGTATATTCTATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGGCAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCTCAGCTGGCACTTCAGGTCCGATATCTAGATTTTCATATCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCTGGATGTGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGGAATGCAAATATTCGTGATAAAAAAATTGCAGAGGGAAAATTTTTGTACAGAGTAGCCTTTGGAATCCAGAAACATCTTCCTTCTCGGGTAATGAAAAATGCTGAAATAGAGCAAGGTCCCGAAGGAATGGAAAAATATTGGTTTTCTGAAACACGCATTCCTTTATATTTGGTAAAAGAGTATGAAGTACGTAATGGAAAAGTGCTATCTGAGAAAGAGTACATGCATATTACATCTCATATGCACAAAAGGCGGTTGACAGCTACCTACAAGGACATATTTTTTTACCTTACCTGCAAGAGAGACAAGTTGGACATGTTATCATGCTCTGTATGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCTTGTGAAGGTTATTGTCACATGGGGTGTTCCGTGAGTTCGACAGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAACAGTCCTGTTATGAATCTCCAACTAGTCCCTTACTTTTACAAGGACAAGAACGTAGCACTTCGGCAGTTCTGAAGGGGCCAAGGCCTAATGGTGATGGTCAAGGATTGATGTCTGCTAAGACAAAGAATAGTCGACTTGACATGAAACGAGTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGTAGCAGAAGTTGCTCTTGGGGTATTATATGGAAAAAGAAGAATAATGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTCTAAAGGAAGGTTCAGGCCTGCCTCAACTGGATCCTGTTTGTCGTTTGTGCCATAAACCATATAGATCTGATCTAATGTATATTTGCTGTGAAACATGCAAACATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAGTCCAAACTTTTTGACGTGCTGGGCTTCAAATGTTGCAAGTGCCGCAGGATAAAGTCGCCTGTGTGTCCTTACTCTGATTTGTACATGATGCAAGGGGGCAAGAAGTTGCTCACAAGGGCTTCAAAGAAAGAGCACTTTGGGGCATATTCTGATTCCGGTACACCTATCGACATGAGAACATGTGAGCCTGCAACTCTTATCTATCCTGCAGGGGATGTCTCTAGACAAGACAATGATCCTCTGTTTTTCTCCCTTTCAAGTGTTGAGCTGATTACAGAACTCCAGTTAGATGCAGATGATGCAGGTAATACTGTCTCTGGTCCAGGGCTTCCGAAATTACCTAAATGGGAGGGGGAGAATAATGGTTCTTTTATAGGTAATCTTCATGCTGAGTTTTCAACAAGCAATGCAATGGTGTCCAAATCTGTAAAAGATTTATCACCTGTAGAATATGGCTCTGCGGACTGCAATCTTCTGAATAACTCTGAAATTGTAAATTTTGATGAATTGGTGGATTTTGAACCTAATACCTACTTCTCTCTGACTGAACTGCTCCACTCAGATGATAATAGTCAATTTGAGGAAGCCAATGCATCTGGGGACTTCTCAGGGTATTTGAAAAATTCTTGTACATTAGGTGTTCCTGAAGAATGTGGGACTGTTAATTTAGCATCCAACTGTGGATCTACAAATTCGTTACAAGGAAATGTTAATAAATGTCGGCAATGTTCACAAAAGGAACCGGCCCCTGATCTCTCTTGTCAGATTTGTGGGATTTGGATTCACAGCCATTGTTCACCTTGGGTTGAATCACCATCTCGGCTTGGTAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4827 0.4237 MEPPVVRSRGRPRKRRREDEATVTGDAKTLPEAKKTTPVALIGRYVLKEFRRNTVLLGKVARYVSGLYRVVYESGGFEDLDSNEIRRILLLDSYFDDDLIRRKVELEESVLPKITAEEPEKGSSELQGELSVDNEEERAETDDDEARDSSSGAEMPEKAIPSPLMLPPSSGTIGVPEPCVLNLFSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNALLDAIHVSLMRVLKRHLENISPDGSRPATKCLRCSDWSLVDALTWPVFVFQYLAIFGYTKGPEWKGFYDEIFYGEYYLLPASRKLTILQILCDEVLASEELKAEMNMREESEVGIDHDNEDCLPAENGPRRVHPRYSKTTACKDAETKKYVSELNAEEDDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPEGAWYCPECKIDMIGPTIARGTSLKGAEVFGKDLYGQVFMSTCNHLLVLNVNSDGFCLKYYNQNDIPRVLQVLYASEQHRPIYNGICMAMLEYWNISEKFLPICVSRLTPMVEEEHKAVSSVKEEYSLMFGNGICGDNLVPSLDASLVTTRSPAPGSSGNARTTVNLKLNEETAMDSTVSTVNHHHSDPKCQNSVNRSAAVSPVKCSLVSRQFNNYGHANDVGLPMNLSLQTKGDQSGFGKCKGSLTNDFVYMGCSYKPQSYINYYMHGDVAASAAANLAVLSSEDSRSEGHVSGNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCISCKASVSSKKGCMLNHAAISATKSAMKILSGLAPVRSGEGIIPSIATYVMYMEESLRGLIVGPFLSECYRKHWRKQVERAKSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTMQSATCTLGTTQKRATCGKRKKQLSINKVTVGGCQENFAWWHGGKFTKSVFQKAVLPKSMVKKGARQGGLRKISGIFYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFHIRWSDLIRPEHNLLDVKGQDTEASAFRNANIRDKKIAEGKFLYRVAFGIQKHLPSRVMKNAEIEQGPEGMEKYWFSETRIPLYLVKEYEVRNGKVLSEKEYMHITSHMHKRRLTATYKDIFFYLTCKRDKLDMLSCSVCQLGVLIGNALKCSACEGYCHMGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKQSCYESPTSPLLLQGQERSTSAVLKGPRPNGDGQGLMSAKTKNSRLDMKRVASDFPLETKGRSRSCSWGIIWKKKNNEDTGFDFRLKNILLKEGSGLPQLDPVCRLCHKPYRSDLMYICCETCKHWYHAEAVELEESKLFDVLGFKCCKCRRIKSPVCPYSDLYMMQGGKKLLTRASKKEHFGAYSDSGTPIDMRTCEPATLIYPAGDVSRQDNDPLFFSLSSVELITELQLDADDAGNTVSGPGLPKLPKWEGENNGSFIGNLHAEFSTSNAMVSKSVKDLSPVEYGSADCNLLNNSEIVNFDELVDFEPNTYFSLTELLHSDDNSQFEEANASGDFSGYLKNSCTLGVPEECGTVNLASNCGSTNSLQGNVNKCRQCSQKEPAPDLSCQICGIWIHSHCSPWVESPSRLGSWRCGDCREWR 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02845 1608 Pfam DDT domain 179 233 IPR018501 -
Gma13g02845 1608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 465 IPR013083 -
Gma13g02845 1608 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1605 - -
Gma13g02845 1608 SUPERFAMILY FYVE/PHD zinc finger 1283 1342 IPR011011 -
Gma13g02845 1608 PANTHER PHD FINGER FAMILY PROTEIN 1 1605 - -
Gma13g02845 1608 SUPERFAMILY FYVE/PHD zinc finger 1555 1605 IPR011011 -
Gma13g02845 1608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1284 1342 IPR013083 -
Gma13g02845 1608 Pfam PHD-finger 386 428 IPR019787 -
Gma13g02845 1608 CDD PHD_SF 1288 1335 - -
Gma13g02845 1608 MobiDBLite consensus disorder prediction 1 26 - -
Gma13g02845 1608 ProSiteProfiles DDT domain profile. 177 237 IPR018501 -
Gma13g02845 1608 ProSitePatterns Zinc finger PHD-type signature. 386 427 IPR019786 -
Gma13g02845 1608 SMART testlast3 177 237 IPR018501 -
Gma13g02845 1608 SMART PHD_3 1288 1336 IPR001965 -
Gma13g02845 1608 SMART PHD_3 1128 1177 IPR001965 -
Gma13g02845 1608 SMART PHD_3 385 428 IPR001965 -
Gma13g02845 1608 SMART PHD_3 1560 1605 IPR001965 -
Gma13g02845 1608 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 292 324 IPR028942 -
Gma13g02845 1608 SUPERFAMILY FYVE/PHD zinc finger 355 429 IPR011011 -
Gma13g02845 1608 MobiDBLite consensus disorder prediction 115 159 - -
Gma13g02845 1608 ProSiteProfiles Zinc finger PHD-type profile. 383 430 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02845 Gma-Chr13 42966056 42973724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02845 267 558 EF-hand Containing Proteins AT5G22760 45.110 4.26e-74 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gma13g02845 DDT 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02845 - - gmx:100794210 3257.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02845 13 42966056 42973724 Gma13g02845 13 42966056 42973724 ECH
Gma13g02845 13 42966056 42973724 Gma12g01706 12 37552801 37560359 GST
Gma13g02845 13 42966056 42973724 Gma12g00750 12 6833951 6842439 PCT
Gma12g00750 12 6833951 6842439 Gma13g02845 13 42966056 42973724 PCT