Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02844 ATGGGGAGCAAGGTGAGCGACCACCACTTATCCACCGTCCGATCCATCGTGGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTCCACATGGCCAAAAACGACGTCACTGCGGCCATCAACATCATCTTCGACACTCACACTGCCCCCAAATTCAAGCCCACGCGCCCCACCAATCCCCGACCAGTTTCTCCTCCAAAATCGACCCCTCCCACTCCCACTGTCAACGCCAACTCAAACTACAGCGTCGGTGAACGACACAGCGATGATAACCGCGACGATTGGTGGCTCGTGTGTTGTAGTGAAATGACATGTTTGTCCACGTGTAAAGGGAGGACTATAAGTTCCGGCGAGACCGTGGTTTTCAAGTTTCCGGCGAAGAAGCTCTCCGCTTCGCCCTCTCCGGGGAAGGGGTTCGGGCGGGCAGCGACTTGTTCGGAGATAGTTCGATTCTCCACGGAACAAGCTGGGGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATATGCGCCTAAAGTTTTGGGAATCATGGACTCCATTGTTTTGTCAGTGAGTGTATTTATCAATAGTTCGATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCCACTGATGAATCGGTGTTTCATCCACTTACAAATTTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAGAAGGCGGAGTTAACTCCTAGTGATTTCTATTCCAACAAACGTCCTCTCACTCAAAGGGTCACATTACCATGTTCCAAGTCTGAGCATCCTTCTCAAAATGGTCACGAGAGTGACAATGAGGATTCCATTTCTGAAATTGATGTTGAGAACATTGTTGGTGTTGGATCGAGCTCAGAGTTAGAGGAAATGGACCCCCCTGGTAATCTTATGTGTGAACTGCGGCCCTATCAAAAGCAGGCGCTTTATTGGATGATCCAGATGGAGAAGGGACAATCTATGGACGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCGTTTTCTGGTGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCGTTGCCCATTCAGGAAAGGGTGGATCAATAGGCAGTCAACCCATAACCCAATCCTTTATTGAAAGTGGTGAAGTTAGTGATACAGTGCACAAATTTTCAAACATACCCAAGAAGGCAACCAAATTTGCTGGTTTTGATAAACCGATGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGCACACCCTGGGTCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCGCCGAAAATGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTTTTGCAGCTGCTGCTCTAATTTCTGACAGACGTTGGTGTCTAACAGGCACTCCGATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAAAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCAATCCTAGTTCTCCCTCCAGCTGATACGCAGGTAATTTACTGTGAACCCACAGAAGCTGAAAAGGACTTCTATGGAGCCCTATTCAAAAGATCTAAGGTAAAATTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAACAAACTAGCCAAGCGCTTCCTTAGAGGAACCTATACTGCTTCAGAAGGTGAAGTAAAAGATACACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGTCTTGAAGTATTTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGGAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCTTGCAAGGTAACTGTTCTTTTGAATGAACTTGAAAATCTTCGCTCATCTGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAACATTTCGTTTGTTCGACTTGACGGGACTTTGAATCTGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCCGAAGACAGCAACACCCTGGTGCTGTTAATGTCACTAAAAGCTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGGAATTGAAGATGCTTTTTACTTAG 3012 0.4522 MGSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTAPKFKPTRPTNPRPVSPPKSTPPTPTVNANSNYSVGERHSDDNRDDWWLVCCSEMTCLSTCKGRTISSGETVVFKFPAKKLSASPSPGKGFGRAATCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDHKVRIEGQCKYAPKVLGIMDSIVLSVSVFINSSMFGKHHQVSLKDAANSTDESVFHPLTNLFRLLGLNPFKKAELTPSDFYSNKRPLTQRVTLPCSKSEHPSQNGHESDNEDSISEIDVENIVGVGSSSELEEMDPPGNLMCELRPYQKQALYWMIQMEKGQSMDETATTLHPCWEAYHLADKRELVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGGSIGSQPITQSFIESGEVSDTVHKFSNIPKKATKFAGFDKPMKQKNALTSGGNLIICPMTLLGQWKAEIETHAHPGSLSLYVHYGQSRPKDAKSLAENDVVITTYGILASEFSSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISFAAAALISDRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADTQVIYCEPTEAEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYTASEGEVKDTPSRAYVQEVVEELRKGEQGECPICLEVFEDAVLTPCAHRLCRECLLSSWRNATSGLCPVCRKTISRLDLITAPTENRFQVDIEKNWVESCKVTVLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNLQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02844 1003 ProSitePatterns Zinc finger RING-type signature. 783 792 IPR017907 -
Gma13g02844 1003 Gene3D - 650 1003 IPR027417 -
Gma13g02844 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 634 IPR027417 -
Gma13g02844 1003 Pfam Zinc finger, C3HC4 type (RING finger) 765 813 - -
Gma13g02844 1003 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 379 596 IPR014001 -
Gma13g02844 1003 Pfam HIRAN domain 103 203 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gma13g02844 1003 PANTHER DNA REPAIR PROTEIN RAD5 103 1003 - -
Gma13g02844 1003 Pfam Helicase conserved C-terminal domain 838 950 IPR001650 -
Gma13g02844 1003 Pfam SNF2-related domain 324 712 IPR000330 GO:0005524|GO:0140658
Gma13g02844 1003 MobiDBLite consensus disorder prediction 271 292 - -
Gma13g02844 1003 SMART ring_2 768 807 IPR001841 -
Gma13g02844 1003 MobiDBLite consensus disorder prediction 56 73 - -
Gma13g02844 1003 CDD RING-HC 768 807 - -
Gma13g02844 1003 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 838 1003 IPR001650 -
Gma13g02844 1003 MobiDBLite consensus disorder prediction 50 89 - -
Gma13g02844 1003 ProSiteProfiles Zinc finger RING-type profile. 768 808 IPR001841 -
Gma13g02844 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 729 832 IPR013083 -
Gma13g02844 1003 SMART ultradead3 317 618 IPR014001 -
Gma13g02844 1003 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 103 1003 - -
Gma13g02844 1003 SMART HIRAN_2 99 207 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gma13g02844 1003 Gene3D - 378 646 IPR038718 -
Gma13g02844 1003 CDD DEXDc_SHPRH-like 321 634 - -
Gma13g02844 1003 SMART helicmild6 867 950 IPR001650 -
Gma13g02844 1003 CDD SF2_C_SNF 834 961 - -
Gma13g02844 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 992 IPR027417 -
Gma13g02844 1003 SUPERFAMILY RING/U-box 756 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02844 Gma-Chr13 42951406 42959589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02844 1 1003 RAD5 or RAD16-like Gene Family AT5G22750 70.999 0.0 1490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma13g02844 SNF2_N 3.5e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02844 K15505 - gmx:100794558 2004.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02844 13 42951406 42959589 Gma13g02844 13 42951406 42959589 ECH
Gma13g02844 13 42951406 42959589 Gma12g01707 12 37576559 37585928 GST