Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02839 ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGAGAGTCTGTTAAGGTAGACCCAGCCGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGATAAGCCTGAACCGGTGGTTCTCTACATGAAAGTTGGTGAACAGAAATTTGTCTTGGGAACCCTTTCCAGGGAGAAAATCCCTCAAATATCTCTGGAATTGGTTTTGGAAAAGGAGTTTGAGCTTTCCCACAGTTCAAAGAGTGCCAGTGTTCATTTCTGTGGATACAAGGCATATTACGATGCCGATAATAGTGACGAGGATGAATTTACTGATAGTGATGAGGATGATGAGGATGTTCCATTGATTAACGCAGAGAATGGAAAACCTGAAACAAAAGCTGAAGACTTGAAGGTACCTGAATCTAAAAAAGCTGTTGCCAAGGCTAGTGGATCAGCAAAACAAGTCAAGGTTGTTGAACCAAAAAAAGATAACGAGGAGGACTCTGATGATGATTCTGATGATGATGATTTTGGATCTTCTGATGAAGAGATGGAGGATGCTGATAGTGACagtgatgatgagagtggtgatgaagatgatgatgaagagACCCCTCCCAAGAAGGTGGATCTGGGAAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCAGTTTCTTCCAAGAAAGCCAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAAGGTGGACATACAGCAACTCCTCACCCTGCGAAGAAAGGCGGAaagactcccaacagcgaagccaaagccaagactcccaacagtgaagccaaagccaagactccTAAGTCTGGTGGACTCTCTTGCAAAACCTGCAGCAAGTCTTTCACCAATGAAAGTGGTCTGCAACAACATAACAAGGCAAAGCATGGTGGTCAGTGA 921 0.3898 MEFWGAEVKVGESVKVDPAEFEACIHLSQAALGEAKKDKPEPVVLYMKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKSASVHFCGYKAYYDADNSDEDEFTDSDEDDEDVPLINAENGKPETKAEDLKVPESKKAVAKASGSAKQVKVVEPKKDNEEDSDDDSDDDDFGSSDEEMEDADSDSDDESGDEDDDEETPPKKVDLGKKRPNESASKTPVSSKKAKNATPEKTDGKKGGHTATPHPAKKGGKTPNSEAKAKTPNSEAKAKTPKSGGLSCKTCSKSFTNESGLQQHNKAKHGGQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02839 306 MobiDBLite consensus disorder prediction 260 300 - -
Gma13g02839 306 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 302 - -
Gma13g02839 306 MobiDBLite consensus disorder prediction 230 244 - -
Gma13g02839 306 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Gma13g02839 306 MobiDBLite consensus disorder prediction 162 202 - -
Gma13g02839 306 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 302 - -
Gma13g02839 306 SMART c2h2final6 280 303 IPR013087 -
Gma13g02839 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 306 IPR013087 -
Gma13g02839 306 MobiDBLite consensus disorder prediction 101 306 - -
Gma13g02839 306 MobiDBLite consensus disorder prediction 102 118 - -
Gma13g02839 306 ProSitePatterns Zinc finger C2H2 type domain signature. 282 303 IPR013087 -
Gma13g02839 306 MobiDBLite consensus disorder prediction 126 140 - -
Gma13g02839 306 SUPERFAMILY beta-beta-alpha zinc fingers 268 302 IPR036236 -
Gma13g02839 306 Gene3D Nucleoplasmin core domain 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02839 Gma-Chr13 42902255 42905597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02839 1 303 C2H2 Transcription Factor Family AT5G03740 38.318 2.14e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g02839 NPL 8.1e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02839 - - gmx:100792094 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02839 13 42902255 42905597 Gma13g02839 13 42902255 42905597 ECH
Gma13g02839 13 42902255 42905597 Gma12g01711 12 37640956 37644722 GST
Gma13g02839 13 42902255 42905597 Gma12g00755 12 6937979 6941872 PCT
Gma13g02839 13 42902255 42905597 Gma11g01551 11 16555544 16558180 PCT
Gma12g00755 12 6937979 6941872 Gma13g02839 13 42902255 42905597 PCT
Gma11g01551 11 16555544 16558180 Gma13g02839 13 42902255 42905597 PCT