Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02828 ATGGATGTTACAATGAAGAAAGTAGAGAGTGAATCTCCTTATTATTGTTCCTCTTCATCACCATCATCCACTTCCTCTGAAAGCAAACTCTCATCAGCATCACCGTGCAACCCGAACTCTCCACCGGACCCTTCATCGTGGCATGCAGAAACTTCAAAGAAAGTAGTAGTGTTGATCCCTCACAAAAGGAAAGCGGGGAGAAAGAAGTTTCGAGAGACACGCCACCCGGTGTACAGAGGGGTTCGGCAGAGGAACGGTAACAAATGGGTGTGTGAAGTTCGTGAACCGAACAAGAAGTCGAGGATATGGCTCGGGACATATCCTTCGCCAGAAATGGCAGCTAGGGCACATGACGTGGCCGTCCTAGCACTTAAGGGCACCTCTGCTGTGTTCAATTTCCCTGATTCGGTTTCTCTTCTTCCGGTTGCAAACTCATCTTCTGCTGCTGATATAAGACTTGCTGCATCAAAAGTTTCATCGGTTTTTGGCCCTTCTTCTTCATCTAGTTCCCGCGTCGAGACTAAGCCTTGTTTGGTTGATGGTTTTGTTAAGACTGAGAATAACGTTGATGAGGTCAAAACAGTGTTTTTTGATGAAGAGGCGTTCTATAATATGCCTGTTTTCTTAGATAGTATGGCAGAGGCTCTTCTCATTACTCCACCTTCTATGAAGAGAGCATTTGATTGGGACGAGGTTGATTGTGAAACAGACCTCACTCTCTGGACAGATTAA 732 0.4563 MDVTMKKVESESPYYCSSSSPSSTSSESKLSSASPCNPNSPPDPSSWHAETSKKVVVLIPHKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEVREPNKKSRIWLGTYPSPEMAARAHDVAVLALKGTSAVFNFPDSVSLLPVANSSSAADIRLAASKVSSVFGPSSSSSSRVETKPCLVDGFVKTENNVDEVKTVFFDEEAFYNMPVFLDSMAEALLITPPSMKRAFDWDEVDCETDLTLWTD 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02828 243 MobiDBLite consensus disorder prediction 1 51 - -
Gma13g02828 243 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Gma13g02828 243 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Gma13g02828 243 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Gma13g02828 243 MobiDBLite consensus disorder prediction 11 36 - -
Gma13g02828 243 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Gma13g02828 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 242 IPR045277 GO:0003700
Gma13g02828 243 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 242 - -
Gma13g02828 243 Gene3D AP2/ERF domain 77 135 IPR036955 GO:0003700|GO:0006355
Gma13g02828 243 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Gma13g02828 243 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Gma13g02828 243 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02828 Gma-Chr13 42792921 42793652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02828 44 242 AP2-EREBP Transcription Factor Family AT4G25470 44.828 1.89e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g02828 AP2 3.9e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02828 13 42792921 42793652 Gma13g02828 13 42792921 42793652 ECH
Gma13g02828 13 42792921 42793652 Gma12g01723 12 37785258 37786016 GST
Gma13g02828 13 42792921 42793652 Gma12g00766 12 7075988 7076380 PCT
Gma13g02828 13 42792921 42793652 Gma11g01538 11 16411367 16412077 PCT
Gma12g00766 12 7075988 7076380 Gma13g02828 13 42792921 42793652 PCT
Gma11g01538 11 16411367 16412077 Gma13g02828 13 42792921 42793652 PCT