Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02826 ATGAGTGAGACTGGGAACCCCGTTTTGTTTCACTTTCCTCATCCCCAACCCCAACCCCTTATAACACTCAAAAACACGCACGCAGACTTAGACTCACTCCTTTCCATTTCCAACGCAATGGACCCATGGCTCGACGATCTTACCGACGACCTTCAGAGTCTTAGCTTCGCCTCCACCGCCACCGCGGACATCAAGCGGAGCACCAGCTTCGGCTCCGAAACCACCACCCTAACGGCCTCCTCCTCCGCCCACCTCCCCGCCAACAGCAAGCCCCACGCGCCCTCCTCCGACCCCCGCTGGGCCGCCATCCACCGGATCCGATCGGACTCCCCCAGCCGCCGCATCCTCCCCTCCGACCTCCTCTTCTCCCGCCGCCTTGGCTCCGGCGACATCAGCTCCGTCTACCTCGCCGAACTCAACGACGGCTCCCTCTCCGTCATGTTCGCCGCCAAGGTCATGGACAAGAAGGAGCTCGCCAGCCGCAGCAAGGAGGGAAGAGCCAAGACCGAGCGAGAAATTCTCGAATCGCTCGACCACCCCTTCCTCCCCACCCTCTACGCCACCATCGACGCCGCCAAATGGCTCTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTACGCCAACGACAGCCCCACAAACGCTTCTCCGAACCCGCCGTCAGGTTCTACGCGTCAgaggtgctagtggcacttgaataccttcacatgatggggatagtgtaccgtgatctgaagccggagaacgtgttagttcgatcagacgggcacatcATGCTCACTGATTTTGACCTCTCGTTAAAATGTGATGATTCCACATCAACGCCACAGATCATCTTGGATCAGAAAAACACCCCTCGCACGGGCCCACGCGTGGAACCCTCTCAGACTCAGTTCAGCTCGTCTTCGTGCATACTACCCAACTGTATAGTCCCCGCAGTGTCGTGTTTCCACCCAAAACGCAAGCGAAAGAAGAAGCAGAGCCAACACAATGGGCCTGAGTTTGTAGCCGAGCCCATTGATGTCCGCTCCATGTCGTTCGTTGGGACCCACGAGTACTTGGCTCCGGAAATCGTGTCTGGGGAGGGTCACGGTAGTGCCGTGGACTGGTGGACTTTGGGCATATTTATATTTGAATTGTTCTATGGTATCACACCCTTTAGGGGAATGGACAATGAGCTAACCCTAGCAAACATTGTGGCTCGAGCCTTGGAGTTCCCCAAGGAACCCACCGTGCCAGCCACGGCAAAGGACCTCATCTCACAGTTATTGGTTAAGGACCCTTCGAGGAGGCTAGGGTCAACCATGGGTGCTTCCGCCATCAAGCACCACCCCTTTTTCCAAGGTGTTAATTGGGCATTGCTAAGGTGTACACCTCCACCCTATGTGCCCCCACCTTATATTAAAGAAGCTGTATCATCTGATCATGAAATTGAAACCTGTCCGCAGACTCCAATTGATTACTATTGA 1479 0.5281 MSETGNPVLFHFPHPQPQPLITLKNTHADLDSLLSISNAMDPWLDDLTDDLQSLSFASTATADIKRSTSFGSETTTLTASSSAHLPANSKPHAPSSDPRWAAIHRIRSDSPSRRILPSDLLFSRRLGSGDISSVYLAELNDGSLSVMFAAKVMDKKELASRSKEGRAKTEREILESLDHPFLPTLYATIDAAKWLCLLTEFCPGGDLHVLRQRQPHKRFSEPAVRFYASEVLVALEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSTSTPQIILDQKNTPRTGPRVEPSQTQFSSSSCILPNCIVPAVSCFHPKRKRKKKQSQHNGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGITPFRGMDNELTLANIVARALEFPKEPTVPATAKDLISQLLVKDPSRRLGSTMGASAIKHHPFFQGVNWALLRCTPPPYVPPPYIKEAVSSDHEIETCPQTPIDYY 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02826 492 SMART serkin_6 120 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02826 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Gma13g02826 492 Gene3D Phosphorylase Kinase; domain 1 122 205 - -
Gma13g02826 492 ProSiteProfiles Protein kinase domain profile. 120 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02826 492 Gene3D Transferase(Phosphotransferase) domain 1 346 468 - -
Gma13g02826 492 MobiDBLite consensus disorder prediction 71 98 - -
Gma13g02826 492 Pfam Protein kinase domain 124 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02826 492 Pfam Protein kinase domain 347 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02826 492 SUPERFAMILY Protein kinase-like (PK-like) 94 477 IPR011009 -
Gma13g02826 492 CDD STKc_phototropin_like 124 461 - -
Gma13g02826 492 PANTHER OS11G0150700 PROTEIN 40 492 - -
Gma13g02826 492 MobiDBLite consensus disorder prediction 71 89 - -
Gma13g02826 492 Gene3D Transferase(Phosphotransferase) domain 1 206 277 - -
Gma13g02826 492 PANTHER FLIPPASE KINASE 1-RELATED 40 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02826 Gma-Chr13 42777314 42781150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02826 40 492 AGC Kinase Gene Family AT3G44610 67.865 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gma13g02826 Pkinase 1.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02826 K08286 - gmx:100792738 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02826 13 42777314 42781150 Gma13g02826 13 42777314 42781150 ECH
Gma13g02826 13 42777314 42781150 Gma12g01725 12 37808962 37812602 ECH