Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02814 ATGTATAGCAATTTCAAGGAGCAAGCGATAGAATACGTGAAGCAGGCCGTGCAGGAAGACAATGCCGGAAACTACGCGAAAGCGTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACGCATCTCAAGTACGAAAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAGTTCACCGAGTACCTGCGCCGGGCCGAGGAGATTCGGGCCGTGCTCGACGACGGCGGCCCCGGTCCGGCCTCCAACGGGGACGCGGCTGTGGCTGCAAGGCCCAAAACCAAGCCAAAGGACGGTGAAGGCGGTGGCGACGGCGAGGACCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCGGCCATCATAAGGGAGAAGCCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCCAAACAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTAAAGTTCCCTCAGTTCTTTACTGGGAAAAGACGACCCTGGAGAGCTTTCTTGTTGTATGGACCTCCTGGAACGGGAAAATCATATTTAGCCAAGGCAGTTGCAACGGAAGCCGAGTCCACGTTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCGAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTTATTGACGAAATTGATTCCCTGTGTGGTCAGCGTGGAGAAGGCAACGAGAGTGAAGCTTCAAGACGGATTAAAACAGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACGCCCTATGCCTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGCATATATATTCCGCTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAACTTGACTGAAAGTGATTTTGAATACTTGGCTAGCAGGACAGAGGGTTTTTCTGGTTCAGATATATCTGTCTGTGTAAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTCTTCTTTAAGAATCCTGAGGgtatgtggatcccatgtggacctaagcaacagggtgcagtacaaacctcaatgcaagagcttgctgcaaaaggacttgcttctaagatccttccgccccctattaggaggacagattttgagaaggtactcgctagacaaaGGCCTACAGTAAGCAAAGCCGACCTTGATGTTCACGAGAGATTCACGAAGGAATTTGGAGAGGAAGGTTAA 1305 0.4444 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQTSMQELAAKGLASKILPPPIRRTDFEKVLARQRPTVSKADLDVHERFTKEFGEEG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02814 434 CDD AAA 134 297 - -
Gma13g02814 434 SMART AAA_5 163 299 IPR003593 -
Gma13g02814 434 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 434 - -
Gma13g02814 434 MobiDBLite consensus disorder prediction 73 110 - -
Gma13g02814 434 SUPERFAMILY MIT domain 2 81 IPR036181 -
Gma13g02814 434 SMART smart 2 79 IPR007330 -
Gma13g02814 434 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Gma13g02814 434 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Gma13g02814 434 MobiDBLite consensus disorder prediction 91 110 - -
Gma13g02814 434 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Gma13g02814 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 429 IPR027417 -
Gma13g02814 434 Pfam Vps4 C terminal oligomerisation domain 367 431 IPR015415 -
Gma13g02814 434 PANTHER AAA DOMAIN-CONTAINING 1 434 - -
Gma13g02814 434 Gene3D - 299 414 - -
Gma13g02814 434 Gene3D - 126 422 IPR027417 -
Gma13g02814 434 Gene3D - 6 75 - -
Gma13g02814 434 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02814 Gma-Chr13 42699430 42703354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02814 162 355 Calmodulin-binding Proteins AT3G56690 37.245 4.22e-35 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02814 13 42699430 42703354 Gma13g02814 13 42699430 42703354 ECH
Gma13g02814 13 42699430 42703354 Gma12g01736 12 37910679 37918143 ECH
Gma13g02814 13 42699430 42703354 Gma12g01736 12 37910679 37918143 GST
Gma13g02814 13 42699430 42703354 Gma12g00780 12 7265271 7269176 PCT
Gma13g02814 13 42699430 42703354 Gma11g01520 11 16093474 16097622 PCT
Gma12g00780 12 7265271 7269176 Gma13g02814 13 42699430 42703354 PCT
Gma11g01520 11 16093474 16097622 Gma13g02814 13 42699430 42703354 PCT