Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02812 ATGAGTTTTAGGGAGTGCAATAATGTAGAAAACAAGAATCTATGTCTTCAAACCCCAACTTTTATTGAGTGGCTCAAACCATCATCATCTTCCTCTCAAACTAGTTCAATTTCATCATCACCTCCTTCTTATTCCTTGATTCAGCATGAACAACTTGTACAAGATCAAACGATCCAGTTTTTGCCCTTTAAGGAAGATCAACATATTGGAGTGCAAAAGGAAGGTTTAGAAGTAAAAGAAGAGAAGAAGGTGGAACAGGTGACGGTGGCTTTGCACATTGGATTGCCTAACACGAGAGGCCATGAACCTGATGATGATCATGATGCTGATGAAAAAAAGCTTTTCCATGTTAAGGAAGAAGAAGAACCCTTGAAGAAAAGCTTCCAGGGCAATTGCTCTTTCAACCAGGAGAGAAGATTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGAGCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGATCCGAATTTAGGAAAGGACCAGAGTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCACCCAAGAGCAAAGCCCTTGAAGGATTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCACGGTGCAAAACCATTTATGTGCCGAAAGTGTTCGAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGAAAGTTGTGGTACTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTTAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCTCCACATCCTTCTCTTGAAGGCTTCGTCGAGGATGAGAAGGAATGTGTTACAGGTTCTGATGATGAAGATGATGTTGCTCATGCATGA 960 0.4219 MSFRECNNVENKNLCLQTPTFIEWLKPSSSSSQTSSISSSPPSYSLIQHEQLVQDQTIQFLPFKEDQHIGVQKEGLEVKEEKKVEQVTVALHIGLPNTRGHEPDDDHDADEKKLFHVKEEEEPLKKSFQGNCSFNQERRFWIPTPAQILVGPMQFACSICSKSFNRYNNMQMHMWGHGSEFRKGPESLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECVTGSDDEDDVAHA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02812 319 Pfam Zinc finger, C2H2 type 155 174 IPR013087 -
Gma13g02812 319 SMART c2h2final6 155 177 IPR013087 -
Gma13g02812 319 SMART c2h2final6 239 259 IPR013087 -
Gma13g02812 319 SMART c2h2final6 202 234 IPR013087 -
Gma13g02812 319 Gene3D Classic Zinc Finger 197 288 - -
Gma13g02812 319 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 316 - -
Gma13g02812 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Gma13g02812 319 SUPERFAMILY beta-beta-alpha zinc fingers 225 259 IPR036236 -
Gma13g02812 319 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Gma13g02812 319 SUPERFAMILY beta-beta-alpha zinc fingers 141 178 IPR036236 -
Gma13g02812 319 PANTHER ZINC FINGER PROTEIN WIP2 1 316 IPR043584 GO:0003700|GO:0010468
Gma13g02812 319 Gene3D Classic Zinc Finger 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02812 Gma-Chr13 42671486 42674795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02812 7 308 C2H2 Transcription Factor Family AT1G08290 57.647 3.47e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g02812 zf-C2H2_6 8.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02812 - - gmx:100800644 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02812 13 42671486 42674795 Gma13g02812 13 42671486 42674795 ECH
Gma13g02812 13 42671486 42674795 Gma12g01739 12 37949504 37952867 GST
Gma13g02812 13 42671486 42674795 Gma12g00788 12 7309491 7313249 PCT
Gma13g02812 13 42671486 42674795 Gma11g01514 11 16037114 16040850 PCT
Gma12g00788 12 7309491 7313249 Gma13g02812 13 42671486 42674795 PCT
Gma11g01514 11 16037114 16040850 Gma13g02812 13 42671486 42674795 PCT