Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02807 ATGTACCATCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAGCAGGAAATGGTTCTGGTGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCAAGGTTTATAGAAGCAGTCAACCAGTTAGGGGGAGCTGACAAGGCAACTCCAAAAACAGTAATGAAACTAATGGGAATTCCTGGGCTTACCTTGTATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATCACAACAAGTGCAACAACTGGGGAGAGACTTTCTGAAACCAATGGTACTCACATGAACAAATTAAGCCTTGGACCACAGGCTAACAAAGATTTGCATATAAGTGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAAACTCTTGGCAGACAAAATTTGGGAATAGTAGGACTTGAAGCTGCAAAAGTTCAACTTTCAGAGCTGGTATCCAAAGTCTCATCACAGTGCTTCAACTCAGCATTCACAGAGCTGAAGGATTTGCAAGGATTTTGCCCTCAGCAACCACAAACCAACCCGCCAAACGACTGCTCAATGGACAGTTGCATCACCTCCTGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATGGCTTAAGACACTTCAGCAGCCATATGTTCATGGAGCAAAAGGAAGCCAAAGAAGCTCCCAACAACCTTAGGAACCCTGAAATCAAGTGGTATGATGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAAGAATGAAGAGAGAAGAAACTATGCTGCTGAATGCAGTCCTAGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATGGAAGCAGCATGTATCCCGAGAGACTAATCACAGAAAGCCCATCAGATGGTAGAATCAAGCCACAAACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGTTGCCAACTTCTTACTTTGCAGCAGCAAGATTGGACCTAAACACTCATGGAGACAATGAAGTTTTGTAA 1203 0.4298 MYHHHQHQGKNIHSSSRMPIPSERHMFLQAGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTSATTGERLSETNGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCFNSAFTELKDLQGFCPQQPQTNPPNDCSMDSCITSCDRSQKEQEIQNGLRHFSSHMFMEQKEAKEAPNNLRNPEIKWYDDGKKNTFLAPLSKNEERRNYAAECSPSNLSMSIGLERETENGSSMYPERLITESPSDGRIKPQTMKPVDEKVSQDYRLPTSYFAAARLDLNTHGDNEVL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02807 400 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Gma13g02807 400 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Gma13g02807 400 MobiDBLite consensus disorder prediction 120 139 - -
Gma13g02807 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 398 IPR044848 GO:0003700
Gma13g02807 400 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Gma13g02807 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Gma13g02807 400 Coils Coil 149 169 - -
Gma13g02807 400 MobiDBLite consensus disorder prediction 120 138 - -
Gma13g02807 400 PANTHER MYB-RELATED PROTEIN 2 4 398 - -
Gma13g02807 400 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Gma13g02807 400 Gene3D - 45 103 - -
Gma13g02807 400 MobiDBLite consensus disorder prediction 349 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02807 Gma-Chr13 42617105 42620249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02807 78 336 G2-like Transcription Factor Family AT3G04030 57.795 5.44e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma13g02807 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02807 - - gmx:100799064 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02807 13 42617105 42620249 Gma12g01744 12 38048878 38051950 GST
Gma13g02807 13 42617105 42620249 Gma12g00796 12 7429409 7432310 PCT
Gma13g02807 13 42617105 42620249 Gma11g01507 11 15911822 15915402 PCT
Gma12g00796 12 7429409 7432310 Gma13g02807 13 42617105 42620249 PCT
Gma11g01507 11 15911822 15915402 Gma13g02807 13 42617105 42620249 PCT