Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02796 ATGGAGTTTCTCCCACCTGGTTTTCGATTCTACCCAACAGAGGAAGAATTAGTTGTCTTCTATCTACACAACCAGCTAGAAGGCCAAATACACGACACAAGCAGAGTCATTCCAGTCACTGACATCAATGGCGTAGAGCCATGGAACCTTCCAACACTTGCAGGGGAGTTTTGTCGTGGAGACACGGAGCAATGGTTTTTCTTTTCACCTAGACAAGAGAGAGAGGCCAGAGGAGGCAGACCCAACCGAACCACGGCAAGTGGGTATTGGAAGGCCACGGGTTCCCCTGGCCATGTTTACTCTTCTGACAACAAAGTCATTGGGATGAAGAAAACCATGGTGTTTTACAAAGGGAAAGCTCCCACCGGAAGGAAAACCAAATGGAAGATGCATCAATACAAAGCCATTGAACACTCTCACCAATCCAACACTGCCCCTCCCAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTGTACGTGATATCGGGAAGCTTTCGATCGTTTGATCGACGCCCACTGGAGATGCCAAGAATTGAGCTACGAGTTGATGGGGACAGAGGTGCTGCTTCAACAAGTACTCAACAGAGAGCAGCAGTGGTGGATGGATTAAGTTCTTCTGATACTTCTTCCCACTCTGGAGGAGGAAGAGGGGGTTCTCATATCTCAGAGGCTGGAGCAGGGTCAAGTGGAACCAATTGGAATGCTAGTAATAGTAGGGTTGAGGAACCACTTTGGGAATGGGAACAACTTAATTGGCCATGA 762 0.4829 MEFLPPGFRFYPTEEELVVFYLHNQLEGQIHDTSRVIPVTDINGVEPWNLPTLAGEFCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHQYKAIEHSHQSNTAPPKLRHEFSLCRVYVISGSFRSFDRRPLEMPRIELRVDGDRGAASTSTQQRAAVVDGLSSSDTSSHSGGGRGGSHISEAGAGSSGTNWNASNSRVEEPLWEWEQLNWP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02796 253 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Gma13g02796 253 MobiDBLite consensus disorder prediction 184 240 - -
Gma13g02796 253 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 253 - -
Gma13g02796 253 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Gma13g02796 253 MobiDBLite consensus disorder prediction 224 239 - -
Gma13g02796 253 MobiDBLite consensus disorder prediction 187 216 - -
Gma13g02796 253 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Gma13g02796 253 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 253 - -
Gma13g02796 253 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02796 Gma-Chr13 42538116 42540521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02796 7 253 NAC Transcription Factor Family AT5G22380 57.258 5.69e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma13g02796 NAM 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02796 - - gmx:100784960 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02796 13 42538116 42540521 Gma13g02796 13 42538116 42540521 ECH
Gma13g02796 13 42538116 42540521 Gma12g01754 12 38154434 38155737 GST
Gma13g02796 13 42538116 42540521 Gma12g00814 12 7596230 7597876 PCT
Gma13g02796 13 42538116 42540521 Gma11g01493 11 15735617 15737318 PCT
Gma12g00814 12 7596230 7597876 Gma13g02796 13 42538116 42540521 PCT
Gma11g01493 11 15735617 15737318 Gma13g02796 13 42538116 42540521 PCT