Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02789 ATGATGGAAGGGGTTTCGAGGGAGGCTCAGATGTCGATTGCTGCTTCGTCCATGTTTCCTGGATTCAGATTCTGCCCTACCGATGAGGAGTTGATTTCTTATTACCTGAGGAAGAAGTTGGAGGGTCATGAGGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTTTGTAAATACGAGCCTTGGGATTTACCAGCCAAATCATTCATTCAGTCAGACAACGAATGGTTCTTCTTCTCTCCCCGCGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGAGCAACTGAATGTGGATACTGGAAGGCAACTGGCAAAGAGCGTAATGTAAAGTCAGGTTCCAACATTATAGGAACGAAGCGGACTTTGGTGTTCCACTTAGGGCGTGCACCTAAAGGGGAAAGGACTGAATGGATTATGCACGAGTACTGCATTAATGACAAATCTCAGGAATCTTTGGTCATTTGTCGCCTCAAGAGGAACACAGAGTTCCGTTTGAGCGATGCTTCGAATAGAGCTTCATCAAGTCAAAGGCATCCGGTGAATTCACATGAAAGTGGTTGTGCTATCTCAGGAGGTGGTATTGATCAAAGGGATGCTTGTGAGCAAGACAAAGAGGTTGGATGTAGCTCCAAGAGGGACAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGATTCTGTGTCCGAATCGAATCAGCGACCAGTTAACGAAGCTACTTTCACTGAATCTTCAGGTCAACCAAAGGAGGGGTATGAAGAGGATTGTTATGCAGAGATACTAAAGGATGATATCATCAAATTAGATGAATCATCAGTCTTGGTAGAGAGTCACACAAGACCACAGGATCCTACACAGATGCAACCTGCACCACAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCATTCTCGTGCAGTAGTTCGTTTCCCAAGCACAATGCACTCATCAAAGAATACCTTCTTTGCCAGAACAACCAACAGTTTGGTGGTATTAGCTTTCTTCGTTTTCACTTTGATGGTTCTATATTTTTTGTCCTTAGTGAGAGGACAAAAACAAGACAAGTATTGTGGGGAATTTTCGGGTGTAAATCATGATTAG 1116 0.4355 MMEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLEGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNIIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQESLVICRLKRNTEFRLSDASNRASSSQRHPVNSHESGCAISGGGIDQRDACEQDKEVGCSSKRDSSSYGSPSMEQIDSVSESNQRPVNEATFTESSGQPKEGYEEDCYAEILKDDIIKLDESSVLVESHTRPQDPTQMQPAPQGTAQRRIRLRVGNSKHSRAVVRFPSTMHSSKNTFFARTTNSLVVLAFFVFTLMVLYFLSLVRGQKQDKYCGEFSGVNHD 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02789 371 MobiDBLite consensus disorder prediction 166 183 - -
Gma13g02789 371 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Gma13g02789 371 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Gma13g02789 371 MobiDBLite consensus disorder prediction 277 293 - -
Gma13g02789 371 MobiDBLite consensus disorder prediction 166 250 - -
Gma13g02789 371 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Gma13g02789 371 Gene3D NAC domain 27 176 IPR036093 GO:0003677|GO:0006355
Gma13g02789 371 MobiDBLite consensus disorder prediction 211 247 - -
Gma13g02789 371 MobiDBLite consensus disorder prediction 276 297 - -
Gma13g02789 371 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 12 360 - -
Gma13g02789 371 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02789 Gma-Chr13 42489170 42492459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02789 5 354 NAC Transcription Factor Family AT2G27300 43.169 1.03e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma13g02789 NAM 7.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02789 - - gsj:114373381 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02789 13 42489170 42492459 Gma13g02789 13 42489170 42492459 ECH