Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02784 ATGTCATCATCCGAAgctaagaaaagccgtgggcgccaaaggattgagattaagaaaatgagcaatgaggccaacctccaagtcacgttctcgaagcgccgcagcgggcttttcaagaaagccagtgagcttagcactctctgcggggctagcgtggctctggtggtgttctcgccggggaagaaggtgttctccttcggccaccccagcgtggatggcgtgatagagcgctatctgacgcaggggccaccgccgttgatggatgtccaacgcatggcggaagtgcttgagctcaacgcccagctgactcatatcaatgatcagctggaggcggagaggaagcgagcccaggagctcagtgggaaggagagggagaccgaagcccatctgtggtgggcccgacccgtggaagggatgatctctatcgacaacctgtacaagttgaagaaagcctttgaggtgctgaagcaacaagtGGCCGGTCTTGCTGATAGGGCTTTGTTGCAGTACTCTGTGGCTAATGGAAACCCGGGCCATCAGTTTTTTCCTGGGGCTTCTTCCTCAACCATTCCCAACGTTGTGCTTCAGCCACAACCACTGCCAGTGCCCCCCCAGATGTTCCCTCCCACTCCAAATATGATGATGCTGCCTCCGCCACCCATGTTTCAGAACTACATGCTTCCTGATGGGAGCATGATGAACCCCCATGGGTTTAATGACATGGGAATGGGAGGATTTGGAGGACCAGGGCCTTCTGGTTCTGGTGCTGGTGCTGGTGGTTTCTTTTGA 789 0.2193 MSSSEAKKSRGRQRIEIKKMSNEANLQVTFSKRRSGLFKKASELSTLCGASVALVVFSPGKKVFSFGHPSVDGVIERYLTQGPPPLMDVQRMAEVLELNAQLTHINDQLEAERKRAQELSGKERETEAHLWWARPVEGMISIDNLYKLKKAFEVLKQQVAGLADRALLQYSVANGNPGHQFFPGASSSTIPNVVLQPQPLPVPPQMFPPTPNMMMLPPPPMFQNYMLPDGSMMNPHGFNDMGMGGFGGPGPSGSGAGAGGFF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02784 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Gma13g02784 262 CDD MADS_MEF2_like 11 80 IPR033896 GO:0000977|GO:0045944
Gma13g02784 262 Gene3D - 22 84 IPR036879 GO:0003677|GO:0046983
Gma13g02784 262 Gene3D - 86 169 - -
Gma13g02784 262 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Gma13g02784 262 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 10 163 - -
Gma13g02784 262 PANTHER MADS BOX PROTEIN 10 163 - -
Gma13g02784 262 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Gma13g02784 262 SUPERFAMILY SRF-like 11 88 IPR036879 GO:0003677|GO:0046983
Gma13g02784 262 Coils Coil 92 126 - -
Gma13g02784 262 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Gma13g02784 262 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Gma13g02784 262 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02784 Gma-Chr13 42412563 42413351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02784 6 189 Type I MADS-box Gene Family AT5G60440 49.741 7.40e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma13g02784 SRF-TF 5.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02784 - - gmx:100793249 439.113