Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02781 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGCCGCGGCGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCCGAGAAGATGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAGCGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATTCAGCATCCTTACATTGTGGAATTTAAAGAGGCTTGGGTTGAGAAGGGTTGTTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAGAAATCAAACGGGATTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAAATACTCTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTACATCGTGATCTAAAGTGTTCCAATATCTTTCTTACCAAGGATCATGATGTTCGCCTTGGTGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGTTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTGAAAACATTGATAAAGGGCATGCTGAGAAAAAATCCCGAGCATCGTCCAACAGCATCTGAAATCTTAAAGCACCCTTATTTGCTGCCTTATGTTGATCAATATCGTTCATCTTTCTGTACTCCAACAGCTGGTTCTCCTGAAAAGCCAATTTCTGCTGTCCATCATGCTCTAAAAAATAAGCCAGGAAGTCAAAACAGAAGTAGTTCGAGTACCGAGAAAGATAGTTTGATGTCAAATGAGAAAAACAATGCAAAAGCATTGCACAAATGTGATTGCAAAATCACTGAAATAGACCTGACATCAATTGAGGATGACAGCTCTGAGCAACTCCTGCCTGGGGAAGAAGGAAATGGTTCCAGCAAAGTCAATGCCAAGACAAATGAGAAAGAGCTGACGAAGCAATCTAATAATGAACAGCATTCTAATGTTGTATCTAAGCAACCAAAAGCAATTAAGACTGTAGTGACAGCTTTAAAAGATGGAAAACTTAAAGAGACAAGTTCTCCAATAAGAAGCAATCGCATAAAGGTTGGTGGTGTGTTGACACATAAAATAAATACAGAGACAGTATCCAATTTGCCCAAACCCAATTTTGGTGCTTACGATTTGAAGCCTAATTTGGAGGTGCCAACTACTGCACCTTCTAAAACAACTCCTGATTCCGCAAAAAGAATGCAAGGGTCAAACACTTCAAAGCATCAGTTACCAATGATAGAATCCACACCAAAAACTAAACCTAGACATAATGTGATTCCACCTTCTGGTCCAGTCAAACAAGTAGAAGGACGTGAAGTTCCTTCCAAGACAAGGCAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTACAGGACATGTGAGGCAGGCTGGGTTTGATGTTCTAAATGCAGCAAATAATACTGGAAAGACAAGTCCAAAGAAAATGGTTCGAGAGCCTAAGATGAGCCATCATCAGTTGACCAACAGTCATCTACCACATGTTTCTAGAGAGATTACTAGAGAGCCTTTGAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCGCTCTCTATTCAAGGATTTGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAACCAACACTTCCTGATCATGAGAATTTAAACCACACTGAAAACAAGGAATCACGTCCAGATAGCAGTTCACCTGCATCCTATTTGCATTTTGACATGTCTGAACAATTGTCTGGGGAAACCCCTGTGGTTACACCACGTTTTCAGAATATAACTTCTAGTAATGAGAAAGTAAGTCCCGGTTTAACTCTTGATCACTCAAGCCAAAATGCTGAGGTAATGCTTTCTTCTGATGATAGTTTTTCCATAAATCAAAGGACTTCATCTGCTGGCTCCAGGTGTGATGATAGATCAGTAGATCCCTCTGCTGAAATCACAGAAGAAGATATTTCAAAGGAAATGACTTCGACCAAGTCTCTCCAACAGCCGCTCCCCATTTTTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCAGCAAGCAAGCCAAATAATAGGTTTGATAAAGTTAGCCCGCCAAAACTCATGTGCATCTCAACTGGTGATGACCAATTCATGGTGAGGGGAAGACTGTCATCAGTGGATGAAACTGCTCCTTTGATTATTTCTACTAATATTTCAAGCCAGAAAGTTTTGCAAGAAGAGAAAGCAACAGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTGTTGGGCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGCGTGGGGAGTGAGCAGCCAGTGAAGGAATCTCTGGAGATGGGAGTTCAAAGTGTAGATGTTGGTAAGTTTATCAACATTGTAAGGGATGATTTAGAAATGAGAAATGTGAGCACTCCTTTGACTCTGAAATCTTCAAATTGCTCTGAAGCTATTGGCTTGAAGTCAAATATTTCTGATAATATGGAAATCAGAAACTTAAGTAATCCTCCTAACTTAAAATCTTCAAGTTGCACCGACTTGATGAACATCAAATCAAGTTTTTCTGATCATCCTGTTGTTAGGCAACAAGATGTGGAAAACACTGATTCTCTTGTTTCAAAATCTGATTCCTCCGAGTATACCAAACATAAGACTCCTACAGCTGCAGAGGGAACACCCCCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAAGCACTTGAAGGACTGCTAGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCCTTTGGAAAAGATAAAGTTTCCCCAAGGGAGACGGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATTGAGGAAAGTGGGGGACGCAGTTAA 3123 0.4118 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKMKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGIYFPEEKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLLPYVDQYRSSFCTPTAGSPEKPISAVHHALKNKPGSQNRSSSSTEKDSLMSNEKNNAKALHKCDCKITEIDLTSIEDDSSEQLLPGEEGNGSSKVNAKTNEKELTKQSNNEQHSNVVSKQPKAIKTVVTALKDGKLKETSSPIRSNRIKVGGVLTHKINTETVSNLPKPNFGAYDLKPNLEVPTTAPSKTTPDSAKRMQGSNTSKHQLPMIESTPKTKPRHNVIPPSGPVKQVEGREVPSKTRQKTPPSLLKPPSFTGHVRQAGFDVLNAANNTGKTSPKKMVREPKMSHHQLTNSHLPHVSREITREPLKTFESSSKGMQTDSSNSVSSSLSIQGFELSDFATTFIDLSEPTLPDHENLNHTENKESRPDSSSPASYLHFDMSEQLSGETPVVTPRFQNITSSNEKVSPGLTLDHSSQNAEVMLSSDDSFSINQRTSSAGSRCDDRSVDPSAEITEEDISKEMTSTKSLQQPLPIFGEKSVCEEFGPASKPNNRFDKVSPPKLMCISTGDDQFMVRGRLSSVDETAPLIISTNISSQKVLQEEKATVLQNPAPERPAVGHLPPAFDDVIHVIRHSSYRVGSEQPVKESLEMGVQSVDVGKFINIVRDDLEMRNVSTPLTLKSSNCSEAIGLKSNISDNMEIRNLSNPPNLKSSSCTDLMNIKSSFSDHPVVRQQDVENTDSLVSKSDSSEYTKHKTPTAAEGTPPKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGGRS 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02781 1040 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02781 1040 MobiDBLite consensus disorder prediction 339 381 - -
Gma13g02781 1040 MobiDBLite consensus disorder prediction 932 949 - -
Gma13g02781 1040 MobiDBLite consensus disorder prediction 442 511 - -
Gma13g02781 1040 Gene3D Transferase(Phosphotransferase) domain 1 90 335 - -
Gma13g02781 1040 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Gma13g02781 1040 SUPERFAMILY Protein kinase-like (PK-like) 4 299 IPR011009 -
Gma13g02781 1040 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02781 1040 CDD STKc_Nek 7 262 - -
Gma13g02781 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1024 - -
Gma13g02781 1040 MobiDBLite consensus disorder prediction 615 638 - -
Gma13g02781 1040 MobiDBLite consensus disorder prediction 445 473 - -
Gma13g02781 1040 MobiDBLite consensus disorder prediction 617 631 - -
Gma13g02781 1040 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1024 - -
Gma13g02781 1040 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gma13g02781 1040 MobiDBLite consensus disorder prediction 932 965 - -
Gma13g02781 1040 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Gma13g02781 1040 MobiDBLite consensus disorder prediction 292 315 - -
Gma13g02781 1040 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02781 1040 MobiDBLite consensus disorder prediction 293 315 - -
Gma13g02781 1040 MobiDBLite consensus disorder prediction 339 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02781 Gma-Chr13 42372973 42379932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02781 14 262 MAP Kinase Kinase Kinase AT1G53570 33.465 1.12e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma13g02781 Pkinase 2.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02781 K08857 - gmx:100780141 2047.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02781 13 42372973 42379932 Gma13g02781 13 42372973 42379932 ECH
Gma13g02781 13 42372973 42379932 Gma12g01772 12 38311437 38319113 GST
Gma13g02781 13 42372973 42379932 Gma12g00836 12 7812115 7818477 PCT
Gma13g02781 13 42372973 42379932 Gma11g01461 11 15356809 15362777 PCT
Gma12g00836 12 7812115 7818477 Gma13g02781 13 42372973 42379932 PCT
Gma11g01461 11 15356809 15362777 Gma13g02781 13 42372973 42379932 PCT