Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02773 ATGCTGTATGAATCTGATATAATGACAGAAATTGAAACTCCTCAATTTTTTCTTTGTCCTATTTCGCTTCAGATCATGAAGGACCCTGTGACAACCGTTACAGGGATAACATACGACAGAGAAAGCATCGAACAATGGTTGCTAAAAGCGAAAGATTGCACGTGTCCAATCACAAAGCAACGATTGCCACGAAGCACAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGCTCAGCAAACGAAGCCAATGGCGTAGACCAAATTCCAACCCCAAAATCCCCTCTTAGCATCGCCAACGTTGAGAAACTCGTGAAGGATCTCGAAGTATCTTCCCGTTTTCAAAGGGCATTGGAGAAGTTGCACGATCTTGCAATAGAGAACGGGAGGAACAGAAGGTGCATGGCTTCTGCGGGTGTAGCAGAAGCTATGGTGCACGTGATCACAAAGAGTTTTATCCAAGGTAACAAAACGACCTCGTGCGTTGAAGAGGCTCTGAGAATTCTTGGTTTGCTTTGGAGTAGTGCTAATAATATGGTCGACAACGACAACATGAAGCGCATGGTGGGTGAGAACTTTGACTTTCTCAACTCTTTGACTTGGGTTTTGCAGCTTCAAACCAAGAACAACGTTAAGGTAATAAACGAAGCAATGCCAATATTGAAATTGACAATTGAAGCCAAAGATTCAACCCCTTTAGGGAACTTGAAGCTTGAATTCTTTAAAGTTGTTGTGAGTGTGATGAAAAATAGAGAACTCACTCAGCAAGCTGTTAAATCTGCATTGCACGTGCTTATAGAAACCTGTCCTTTGGGGAGAAACAGAATGAAGATAGTTGAAGCAGGTGCAGTGGTGGAACTCATTGAACTTGCACTTGAAAAACCAGAAAAGAATATGACAGAACTCATATTTATTCTCTTGGCTCATCTTTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGCAACATGCTGCAGGCATTGCTGTGGTTTCAAAGAGGATCCTTAGGGTTTCACCAACCACTGATGATCGAGCTCTTCATATATTTTCCTTGGTTTCGAAGTTCTCGGCCTCCAATGAGGTCGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAGGAAAAAGCAAGAGGGGTACTTAGGTTGCACTCAAAAACATGGAACAATTCTCCATGTATTCAAGTGTATTTGTTAACCAGATTCCATAGGTGA 1269 0.4303 MLYESDIMTEIETPQFFLCPISLQIMKDPVTTVTGITYDRESIEQWLLKAKDCTCPITKQRLPRSTEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSIANVEKLVKDLEVSSRFQRALEKLHDLAIENGRNRRCMASAGVAEAMVHVITKSFIQGNKTTSCVEEALRILGLLWSSANNMVDNDNMKRMVGENFDFLNSLTWVLQLQTKNNVKVINEAMPILKLTIEAKDSTPLGNLKLEFFKVVVSVMKNRELTQQAVKSALHVLIETCPLGRNRMKIVEAGAVVELIELALEKPEKNMTELIFILLAHLCSCADGREQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARGVLRLHSKTWNNSPCIQVYLLTRFHR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02773 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Gma13g02773 422 SMART Ubox_2 16 82 IPR003613 GO:0004842|GO:0016567
Gma13g02773 422 CDD RING-Ubox_PUB 17 60 IPR045210 -
Gma13g02773 422 SUPERFAMILY ARM repeat 121 399 IPR016024 -
Gma13g02773 422 PANTHER WDSAM1 PROTEIN 10 420 IPR045185 GO:0061630
Gma13g02773 422 Pfam U-box domain 14 87 IPR003613 GO:0004842|GO:0016567
Gma13g02773 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 10 420 - -
Gma13g02773 422 SUPERFAMILY RING/U-box 10 91 - -
Gma13g02773 422 Gene3D - 107 412 IPR011989 -
Gma13g02773 422 ProSiteProfiles U-box domain profile. 12 89 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02773 Gma-Chr13 42287648 42289201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02773 10 412 U-box Gene Family AT2G35930 42.260 8.87e-107 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02773 - - gmx:100778547 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02773 13 42287648 42289201 Gma13g02773 13 42287648 42289201 ECH
Gma13g02773 13 42287648 42289201 Gma12g01785 12 38478004 38479601 GST
Gma13g02773 13 42287648 42289201 Gma12g00845 12 8051933 8053147 PCT
Gma13g02773 13 42287648 42289201 Gma11g01452 11 15115263 15116894 PCT
Gma12g00845 12 8051933 8053147 Gma13g02773 13 42287648 42289201 PCT
Gma11g01452 11 15115263 15116894 Gma13g02773 13 42287648 42289201 PCT