Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02772 ATGGATGAAATTGAAATCCCTGCTCATTTCCTCTGCCCCATTTCCCTCCAACTCATGAGGGACCCTGTCACGGTTTGCACAGGAATCACTTATGATAGAGAGAACATAGAGAGATGGTTATTTTCATGCAAGAACAACACATGCCCCGTTACTAAGCAGTGTCTATTAAACCATGATCTCACCCCAAACCACACTCTACGGAGGTTGATCCAATCTTGGTGCACCCTCAACGCCTCTCTAGGAGTTGAACGCATTCCAACTCCAAAGTCACCAATAGACAGAACTCAGATTGTGAAACTCCTCACAGAAGCAAAAAGGTTCCCTGAGAAGCAACTCAAGTGCCTCACAAGGCTTCGATCCATTGCCTTTGAAGGCCAAAGGAACAAAACATGTTTAGAGTCTGCAGGAGTAATAGAATTCTTGGTCTCAACAATGAAGAACAACAACACACAAGAAGACTCAACTGTTCTCAGTGAAGCAGCTATTGAAGTCTTGTTCCACCTCAATCTTTCCGAGGCTCGGATTAAAGCTCTGATTAACAACGAGGAATTTCATTTTATTGAGTCATTGTTTCATGTTTTAAGACTTGGAAACTACCAATCTAGAGCCTTTGCTACAATGCTGCTTAGATCAGCATTTGAGGTAGCTGATCCAATCCAATTGATCAGTGTCAAAACTGCACTGTTCGTGGAAATCATGCGCGTTCTGCGCGATCAGATTTCGCAGCAGGCTTCAAAGGCTGCATTGAAGCTCATTGTGGAGCTCTTTCCGTGGGGAAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCTGTTTTGGTCCTCGTTGAGTTACTTCTTGGTGCCTCGGAAAGAAGAACGTGTGAACTCATTTTGATAGCTTTGGATCAGCTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCATGTGGCAAGTGACAGAGGGGTTAGAATTTTAGCCTCTATTTGTAGGTATTCCGCCAATGCTAGAGTGCTTCATGAAATGTTGCAGGTTGGGGCAGTGTCCAAGTTGTGCTTGGTGCTTCAAGTGAATTGCAGTTTAAAGACTAAGGAGAGGGCAAAGGAAATACTCCAATTGCATTCTGTGGTTTGGAAGAATTCTCCATGTATTCCTGTACCTTTGTTATCTTCCTATCCATGA 1212 0.4439 MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLNHDLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPIDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNKTCLESAGVIEFLVSTMKNNNTQEDSTVLSEAAIEVLFHLNLSEARIKALINNEEFHFIESLFHVLRLGNYQSRAFATMLLRSAFEVADPIQLISVKTALFVEIMRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVLVLVELLLGASERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCSLKTKERAKEILQLHSVVWKNSPCIPVPLLSSYP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02772 403 Gene3D - 94 390 IPR011989 -
Gma13g02772 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gma13g02772 403 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Gma13g02772 403 PANTHER WDSAM1 PROTEIN 1 403 IPR045185 GO:0061630
Gma13g02772 403 SUPERFAMILY ARM repeat 98 379 IPR016024 -
Gma13g02772 403 SUPERFAMILY RING/U-box 3 77 - -
Gma13g02772 403 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Gma13g02772 403 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Gma13g02772 403 PANTHER OS11G0573500 PROTEIN 1 403 - -
Gma13g02772 403 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02772 Gma-Chr13 42278833 42280479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02772 2 403 U-box Gene Family AT2G35930 54.433 4.93e-160 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02772 - - gmx:100778012 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02772 13 42278833 42280479 Gma13g02772 13 42278833 42280479 ECH
Gma13g02772 13 42278833 42280479 Gma12g01786 12 38481418 38483127 GST
Gma13g02772 13 42278833 42280479 Gma12g00846 12 8067830 8069023 PCT
Gma12g00846 12 8067830 8069023 Gma13g02772 13 42278833 42280479 PCT