LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma13g02744	atggcaagagggggtGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCCTCCCCCACGAGCCAATAGTCTTAAACTCCTTCCCTGAAGACAACAAAGACAACAACAACAGTCGCCAACAACACAAGTGGAAACTTGGTACAAACATGGATGCCACTGTTAGCAGAAAGAGTTCTCCATCATCCACTTCTAACACTAACACCACCATCCCCTTCCAAGACCACCTTACCTCTGATGACAAGATGCCTCACCTCGACGAGATGAACTTCTTCCCCAACAAAAGCAacaaggatgatgacgatgacaacaaccttgcctctgcctccaCCTCTGCACCTCCCTCCCTTGACCACCTTCATCACACACATGATCATTCCTCCGCTATCTTGGGATTGAAAGTAAACACTGGTTTGAATCTTCTTACTACCAATGCAAGCAGTGATCAATCTATGGTGGTGGACGATGACATATCCCCTAATTCAGGAGACAAACGAGCTAAGAGTGAGATGGTTGTTCTTCAAGTTGAGCTTGAGAGAATGAAGGTGGAGAATCATAGGCTGAAGAACATGCTTGATCAGGTTAACAACAATTACAATGCCTTGCAGACGCATTTGGTGAGTTTGATGAAGGACCAGATGGACAAGGAGGATGATAAACAACAACCGCATCAAGTGTTTGATGGAAAACTAGAAGAGAAGCAAGCTGGGAATGGTGGTGGAGCCTTGGTGCCAAGACAGTTTATGGATCTTGGATTGGCCACTAATGCTGACACCAATGAAACTTCGCATTCCCATTCTTCGTCCGTGATAAGAAGTCAGGATTCACCACCAACAAATAATACAGAGGTGGCATCCAAGAAGAATGGGGGTGCTAGTGATGAAGGACTAGTGTTTGATCAAGACAAGAAGGAATTTGGTAGGGGAATTGAGAGAGAGGATAGTCCCTCGGATCAAGGGGTAGCTGCTAATAACAATGTTCCAAAGTTTAGTCCTCCAAGAAATGTTGATCAAGCTGAGGCCACCATGAGGAAGGCTAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCTATGATAACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGTGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACAGAACAATACTGATCACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACTTCCTCGGCAGCAAGAATGCTGCTTTCAGGATCAATGTCAAGTGCTGATGGCCTAATGAATGCAAGCTTCCTCACAAGGACACTCCTCCCTTGCTCTTCTAGCATGGCAACTATCTCAGCCTCAGCTCCATTCCCAACTGTTACATTGGACTTGACTCAGTCTCCAAATCCATTGCAGTTCCCAAAGCAACCAAGCCAATTCCAAATCCCCTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCACAAGCCTCATTGCTGCCTCAGATATTTGGTCAGGCACTTTATAACCAATCCAAGTTTTCTGGCCTTCAAATGTCTCAAGATTCAGACCCTTCCCAATTGAGTAATCAATCTCAAAGGCCACCACCACACCTTGCTGACACAGTTAGTGCTGCCATTGCAGCTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCCATCACTTCCATTATTGGGGGTGCACAGCCAAACAACAATAGTACTACCAGTACTAATTATAATGGCACCACATCGACCAACACCAGCAATGGCAATATTACATCAAGCAACAACAAATAA	1845	0.4439	MARGGGLSIDSDPIGSFLPHEPIVLNSFPEDNKDNNNSRQQHKWKLGTNMDATVSRKSSPSSTSNTNTTIPFQDHLTSDDKMPHLDEMNFFPNKSNKDDDDDNNLASASTSAPPSLDHLHHTHDHSSAILGLKVNTGLNLLTTNASSDQSMVVDDDISPNSGDKRAKSEMVVLQVELERMKVENHRLKNMLDQVNNNYNALQTHLVSLMKDQMDKEDDKQQPHQVFDGKLEEKQAGNGGGALVPRQFMDLGLATNADTNETSHSHSSSVIRSQDSPPTNNTEVASKKNGGASDEGLVFDQDKKEFGRGIEREDSPSDQGVAANNNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNASFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKQPSQFQIPFPGVPQNFANSQASLLPQIFGQALYNQSKFSGLQMSQDSDPSQLSNQSQRPPPHLADTVSAAIAADPNFTAALAAAITSIIGGAQPNNNSTTSTNYNGTTSTNTSNGNITSSNNK	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	41	75	-	-
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	296	314	-	-
	Gma13g02744	614	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	66	605	IPR044810	GO:0003700
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	531	553	-	-
	Gma13g02744	614	ProSiteProfiles	WRKY domain profile.	353	419	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma13g02744	614	SUPERFAMILY	WRKY DNA-binding domain	351	419	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	77	104	-	-
	Gma13g02744	614	SMART	WRKY_cls	358	418	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma13g02744	614	PANTHER	OS05G0567200 PROTEIN	66	605	-	-
	Gma13g02744	614	Coils	Coil	170	211	-	-
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	1	122	-	-
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	256	334	-	-
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	581	614	-	-
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	317	331	-	-
	Gma13g02744	614	Gene3D	WRKY domain	343	420	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma13g02744	614	MobiDBLite	consensus disorder prediction	256	287	-	-
	Gma13g02744	614	Pfam	WRKY DNA -binding domain	360	417	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma13g02744	Gma-Chr13	42051388	42054331	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma13g02744	134	582	WRKY Transcription Factor Family	AT1G62300	52.979	2.71e-129	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gma13g02744		WRKY	3.3e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma13g02744	-		-	gmx:100127384	1084.71

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma13g02744	13	42051388	42054331	Gma13g02744	13	42051388	42054331	ECH
	Gma13g02744	13	42051388	42054331	Gma15g01036	15	8727729	8730417	ECH
	Gma13g02744	13	42051388	42054331	Gma07g02529	07	47619028	47622264	ECH
	Gma13g02744	13	42051388	42054331	Gma12g00867	12	8420446	8423957	PCT
	Gma13g02744	13	42051388	42054331	Gma06g02731	06	51097118	51100456	PCT
	Gma12g00867	12	8420446	8423957	Gma13g02744	13	42051388	42054331	PCT
	Gma06g02731	06	51097118	51100456	Gma13g02744	13	42051388	42054331	PCT