Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02742 ATGGAGTGGACTAGAGGCTTCATTATAGGACGTGGCTCATCGGCCACCGTTTACACCGTCACCTCCTCTCACTCCTCCACCGTCGCGGCCGTCAAGTCGGCAGAGCTAACACTATCAAATTCAGAGCAGCTGCAGAGAGAACAGAGGATTCTGTCTTGTCTGTTTTCTCCTCACATAGTTACCTACAAAGGCTGTAACATTACAGAGGACAAGAACAACACCCTTTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACTCTCTCACAGGAAATTCACCGGCGCGGTGGTGGCCGCCTCAGCGAGCCAGCCACCGTGCACTACACGCGACAAGTCCTGCAGGGCTTAGAGTACTTGCACAATAATGGTGTTGTGCATTGCGATATTAAAGGTGGCAACATTTTGATTGGTGAAGATGGGGCCAAGATTGGGGACTTTGGATGTGCCAAGTTTGCGAATGATTCCTCGGCGGTGATCGGTGGCACGCCTATGTTCATGGCTCCGGAGGTGGCGCGTGGGGAGGAGCAGGGTTACCCTGCTGATGTGTGGGCACTTGGGTGCACTGTGCTTGAAATGGCCACTGGGTTTGCACCATGGCCTAATGTGGAAGACCCTGTGACAGTGTTGTACCATGTTGCATATTCCGATGATGTTCCTGAGATTCCTTGTTTTCTGTCTGAGGAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGGAGGAATCCTAAGGAGAGGTGGAGTTGCAGTCAGCTTCTGAAGCATCCATTTCTTGGGGAATTCAGTTCCAATGATAAGGAAATTCAAGAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGCGCTTTTGGAATTCTGTGGAAGAGGCAGAGGCAGAGTGTGTCTCTGTCTCTGGCAATGTGGTTCAGATTAAAAGTTTTGAGGATTCTCCCATGGACAGGGTCAGAAGTCTTGCTTTGAGCTCAGGGGATCCATTTTGGGAACTGGATGATGAAAATTGGATCACAACAAGAGGCAGTGAAGCAGGGGCTTCGAGTTGTGATGGGTTGAATTTGGATGTTAATAGTAGAATTAGTGGTTATTTATGTGATGATTATTATAAATGTAGGGATGTTAGTGTTGTAGTTGATAATTTCAATTTTGAGAGAGGCAATTCTGAGATGCTTCTCCCTTTAAAATTGGAATTTTTTTTATAA 1197 0.4678 MEWTRGFIIGRGSSATVYTVTSSHSSTVAAVKSAELTLSNSEQLQREQRILSCLFSPHIVTYKGCNITEDKNNTLWFNLFMEYMPFGTLSQEIHRRGGGRLSEPATVHYTRQVLQGLEYLHNNGVVHCDIKGGNILIGEDGAKIGDFGCAKFANDSSAVIGGTPMFMAPEVARGEEQGYPADVWALGCTVLEMATGFAPWPNVEDPVTVLYHVAYSDDVPEIPCFLSEEAKDFLGKCFRRNPKERWSCSQLLKHPFLGEFSSNDKEIQESNSCSPTSILEQRFWNSVEEAEAECVSVSGNVVQIKSFEDSPMDRVRSLALSSGDPFWELDDENWITTRGSEAGASSCDGLNLDVNSRISGYLCDDYYKCRDVSVVVDNFNFERGNSEMLLPLKLEFFL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02742 398 Gene3D Transferase(Phosphotransferase) domain 1 2 314 - -
Gma13g02742 398 SMART serkin_6 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02742 398 SUPERFAMILY Protein kinase-like (PK-like) 4 299 IPR011009 -
Gma13g02742 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gma13g02742 398 Pfam Protein kinase domain 8 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02742 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Gma13g02742 398 PANTHER MAP KINASE KINASE KINASE 1 360 - -
Gma13g02742 398 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02742 398 CDD STKc_MAPKKK 2 257 - -
Gma13g02742 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02742 Gma-Chr13 42031848 42033044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02742 1 287 MAP Kinase Kinase Kinase AT2G32510 51.864 1.39e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma13g02742 Pkinase 1.4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02742 K20716 - gmx:100786897 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02742 13 42031848 42033044 Gma13g02742 13 42031848 42033044 ECH
Gma13g02742 13 42031848 42033044 Gma07g02527 07 47604855 47606538 ECH
Gma13g02742 13 42031848 42033044 Gma12g01821 12 38826081 38827295 GST
Gma13g02742 13 42031848 42033044 Gma12g00868 12 8459903 8460961 PCT
Gma13g02742 13 42031848 42033044 Gma06g02730 06 51083845 51085170 PCT
Gma12g00868 12 8459903 8460961 Gma13g02742 13 42031848 42033044 PCT
Gma06g02730 06 51083845 51085170 Gma13g02742 13 42031848 42033044 PCT