Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02729 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATTGGAAGAAACGGAACCGTTGGTGGCTTTGGATTATCTTCAGGGCTTTCTCTTGGCCAGATTGAAAACCATAAGGCTTCGGAATCTCAAAGATCTGAAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAGCTCCACCCACTGGACATGCCTCAGAACACTTCAGAGAGCGATGTCCCAAGAATCCGTGAAGATGACTTTGACAGTGCCACCAAGTCAGGTAGTGAAAACCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCGTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAACATGAACGCCATGAGAACACACAGCTGAGAACTGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTTCAGGGAAGCTCTCGGCAATGCCTCGTGTCCTAACTGTGGTGGGCCAACCGCCATTGGGGAAATGTCATTCGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTGAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCAAAGTATGTTGGGAAGCCTGTGGTGAGCTATCCACTTGTTTCTCCTTCATCTATTCCTCCGCGCCCACTAGAGCTTGGGATTGGAGGTGGTTTTGGTGGCCAACCTGGAGGCACTGGTGGGGATATGTATGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATAAGTGGACCTACTGAAGCTGATAAGCCAATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCGCAAATGGGTGAGCCTCTCTGGTTGACTACCCTGGATGGCACAACTGTGCTCAACGAGGATGAGTACATCAGGTCCTTTCCTCGAGGGATTGGTCCTAAACCTGCTGGTTTCAAGTTTGAAGCTTCGAGGGAAACGGCTGTTGTTATCATGAACCATGTTAACCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACAGTGTTCGCTGGCATAGTCTCAAGAGCAATGACTTTGGAAGTGTTATCAACAGGGGTGGCAGGGAATTACAACGGTGCATTGCAAGTGATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTGAGGTATTGTAAGCAGCACGGTGACGGGACTTGGGCAGTAGTGGACGTGTCATTGGATAATTTGCGTCCTAGTCCTTCTGCCAGATGTAGAAGAAGGCCCTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATATGGGTTGAGCATGTAGAAGTGGATGACAGAGGTGTCCATAATCTATACAAGCAGCTTGTTAGCTCTGGGCATGCATTTGGGGCAAAACGTTGGGTTGCAACCTTGGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGCATGTTGAAACTTGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCATCCACTGCACACACATGGACGACACTTTCTGGAACTGGTGCTGATGATGTAAGGGTGATGACACGTAAGAGTGTAGATGACCCAGGAAGGCCTCCCGGCATCGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCTGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACAGGATCTTTTGTGATATATGCTCCTGTAGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCGGACTACGTGGCCCTTCTTCCTTCAGGATTTGCTATACTCCCAGATGGAACCACTGCACATGGAGGTGGCATTGGTGACACTGGACATGGTGGTTCTCTCTTGACTGTGGCATTTCAAATATTGGTTGATTCGTTGCTTGACCTAATGGATCATCGTTTAGAAGAAGGATAA 2280 0.4811 MPAGIMIPARNMPSMIGRNGTVGGFGLSSGLSLGQIENHKASESQRSEEMFQPNLMEAGQLHPLDMPQNTSESDVPRIREDDFDSATKSGSENLEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLVSPSSIPPRPLELGIGGGFGGQPGGTGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTVLNEDEYIRSFPRGIGPKPAGFKFEASRETAVVIMNHVNLVEILMDVNQWSTVFAGIVSRAMTLEVLSTGVAGNYNGALQVMTAEVQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGDTGHGGSLLTVAFQILVDSLLDLMDHRLEEG 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02729 759 CDD START_ArGLABRA2_like 298 521 - -
Gma13g02729 759 Gene3D - 352 519 IPR023393 -
Gma13g02729 759 SUPERFAMILY Bet v1-like 542 743 - -
Gma13g02729 759 Pfam START domain 304 522 IPR002913 GO:0008289
Gma13g02729 759 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Gma13g02729 759 MobiDBLite consensus disorder prediction 82 117 - -
Gma13g02729 759 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 63 748 IPR042160 -
Gma13g02729 759 CDD homeodomain 109 167 IPR001356 GO:0003677
Gma13g02729 759 SMART START_1 303 522 IPR002913 GO:0008289
Gma13g02729 759 ProSiteProfiles START domain profile. 294 525 IPR002913 GO:0008289
Gma13g02729 759 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 63 748 - -
Gma13g02729 759 Coils Coil 172 192 - -
Gma13g02729 759 Gene3D - 96 183 - -
Gma13g02729 759 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Gma13g02729 759 SUPERFAMILY Bet v1-like 294 524 - -
Gma13g02729 759 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Gma13g02729 759 SMART HOX_1 107 170 IPR001356 GO:0003677
Gma13g02729 759 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02729 Gma-Chr13 41875663 41881371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02729 50 748 Homeobox Transcription Factor Family AT1G05230 78.835 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma13g02729 START 2.5e-59 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02729 13 41875663 41881371 Gma13g02729 13 41875663 41881371 ECH
Gma13g02729 13 41875663 41881371 Gma12g01835 12 39021822 39029036 GST
Gma13g02729 13 41875663 41881371 Gma12g00894 12 8841636 8848161 PCT
Gma13g02729 13 41875663 41881371 Gma06g02708 06 50761129 50767519 PCT
Gma12g00894 12 8841636 8848161 Gma13g02729 13 41875663 41881371 PCT
Gma06g02708 06 50761129 50767519 Gma13g02729 13 41875663 41881371 PCT