Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02721 ATGGCTGACTCGGATCTCTCTTCAAGTCAAATTTCTACACATTCTACTGATTCAGGAAATCGAGGGTCTTCCAAAGTTGAATTTTCTGAAGATGAGGAAACCCTCATCATCAGGATGTATAAACTGGTAGGGGAGAGGTGGTCTATAATTGCTGGAAGGATTCCTGGAAGAACAGCAGAGGAAATAGAGAAGTATTGGACTTCAAGATTCTCGGGCTCTAGTGAATGA 228 0.4211 MADSDLSSSQISTHSTDSGNRGSSKVEFSEDEETLIIRMYKLVGERWSIIAGRIPGRTAEEIEKYWTSRFSGSSE 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02721 75 Pfam Myb-like DNA-binding domain 25 67 IPR001005 -
Gma13g02721 75 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Gma13g02721 75 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 73 - -
Gma13g02721 75 CDD SANT 27 66 IPR001005 -
Gma13g02721 75 SUPERFAMILY Homeodomain-like 25 70 IPR009057 -
Gma13g02721 75 SMART sant 24 72 IPR001005 -
Gma13g02721 75 MobiDBLite consensus disorder prediction 1 28 - -
Gma13g02721 75 Gene3D - 27 70 - -
Gma13g02721 75 MobiDBLite consensus disorder prediction 1 23 - -
Gma13g02721 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 74 IPR017930 -
Gma13g02721 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02721 Gma-Chr13 41812394 41813927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02721 28 71 MYB Transcription Factor Family AT5G14750 54.545 2.04e-15 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma13g02721 Myb_DNA-binding 3.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02721 - - gmx:100801532 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02721 13 41812394 41813927 Gma12g01841 12 39083004 39088230 GST