Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02712 ATGGATCCTCTATGTGAGTTTTGTCGGGTGGTGAGAGCTGTGGTTTACTGTAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTACACTCTGCAAATTCTTTGTCTCGCAGGCATTCGCGTTCCCTCCTATGCGATAAGTGCAATTCCCAGCCGGCAATGATCCGCTGCATGAATCATAAGTTGTCATTATGTCAAGGTTGTGACTGGAATCCAAATGACTGTTCTGCATTGGGACATAGGCGCCTTGCATTGAATTGCTACACTGGTTGCCCCTCTTTGGCTGAGTTTTCTAGGCTCTGGTCTTTTGTGTTTGATGCTAATTCCTCACTTGGTGGTTGGGAATCGGTTGGTACTTTGCCAAAAAGTGAGAGCTGCACTAGCCAGTGTTTGGAGCAAACTGATCATAATGGTGGTTATTTTGGTTTGGTGAGTGACAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTCGGATGGATCAGTCTCAAATCATTCCATCAAATCCAAATTACACACCGTACTGCAAAGACGAAGCATTTTTCTTTCCTCAAGACTCAAACCAGCCAAAGCTGCAGGAATGTCCTAATCTAGGAATTCATGATGGGAATGAACTTTGTGAAGGTTTCAATGTGGATAACGTTCAATTAAACTTTGAAATTGCTGATGAAATATTTTACTGTTCACAAGTTGCCACAAGATACCACCTTGAAGATGGAGGAATGGACTGTTTATTGATGGATAAAAACATAGCAGTTACAGAATCTAGTTCACTTATTGAGAGTGCCATGGAGGCATCATCATCTATCCAACAAGATTGTGTGGCTTTTCAATCATCGAGGGCTGGTGGGTCAGCTAGTGTGATGCAGGTTATCAACAGCAATACCAATTGTGCACTTATGAATCCTAGCTGCACTAAAAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAACATGCCACTTCAATTTCCCAACATTGTTGGTGAAAATAATTCTACTGAATATCAAGACTGCGGGTTATCGCGAGTGGGTGAATCCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACCTTTGGTAAGCAAATAAGATATGCTTCTCGCAAAGCAAGGGCCGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGATATTCTTCTGACTGAGGAAGGGATTGGATTCATTGTCAATTCAGACAAAAACAGAGGGCCTGGATATTCCTCCTTGCATTTAGAGGAGATGTGCAGAGTGATCCATCCTGAATTTCAAATGTGA 1353 0.4213 MDPLCEFCRVVRAVVYCKSDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCNSQPAMIRCMNHKLSLCQGCDWNPNDCSALGHRRLALNCYTGCPSLAEFSRLWSFVFDANSSLGGWESVGTLPKSESCTSQCLEQTDHNGGYFGLVSDKLDEIESCVRYEPRMDQSQIIPSNPNYTPYCKDEAFFFPQDSNQPKLQECPNLGIHDGNELCEGFNVDNVQLNFEIADEIFYCSQVATRYHLEDGGMDCLLMDKNIAVTESSSLIESAMEASSSIQQDCVAFQSSRAGGSASVMQVINSNTNCALMNPSCTKNISLGFPQGQVHSNMPLQFPNIVGENNSTEYQDCGLSRVGESPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKADILLTEEGIGFIVNSDKNRGPGYSSLHLEEMCRVIHPEFQM 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02712 450 CDD Bbox1_BBX-like 4 47 - -
Gma13g02712 450 ProSiteProfiles CCT domain profile. 367 409 IPR010402 GO:0005515
Gma13g02712 450 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Gma13g02712 450 Pfam CCT motif 367 409 IPR010402 GO:0005515
Gma13g02712 450 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gma13g02712 450 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 410 - -
Gma13g02712 450 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma13g02712 450 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 3 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02712 Gma-Chr13 41750308 41753797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02712 1 409 C2C2-CO-like Transcription Factor Family AT3G21880 41.527 3.10e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma13g02712 CCT 1.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02712 - - gmx:100804738 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02712 13 41750308 41753797 Gma13g02712 13 41750308 41753797 ECH
Gma13g02712 13 41750308 41753797 Gma12g01849 12 39154145 39156726 GST