Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02703 ATGGACGTGAATTCCTCAGGTGGTGCCTCCGATTGGCTTTATGATTATGGCTTTGATATTCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCCGTTGGGGGCCTCAGAGTCACAACTTCAAGGGTCCCTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACAGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTACGAAGGGATAAACTAAATGAGAGGCATGCTATTATTTTGCATATTGTGTTTCTGGAATTGAGTTCCATCCTGGAGCCTAGTAGGCAGCCCAAATCAGACAAAGTTGCAATATTAAGCGATGCGGCTCGAGTGGTAATCCAATTGAGAAATGAAGCCAAGAGGCTGAAGGAAATGAATGATGAACTACAGGCAAAAGTTAAAGAATTGAAGGGTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGTTGAAGGAAGAGAAAGAAAAGTTGGAGCAGCAAGTAAAAGTGGCAAATATACAACCCAGCTTCCTGCCTCAAGCCCCAGATGCTAAAGGACAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACATCAAAGGATCACCTTCTTCGACCTCCAGTTGCATAA 720 0.4431 MDVNSSGGASDWLYDYGFDIPVAGSDFMASDSGGFRWGPQSHNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESCASGSKACREKLRRDKLNERHAIILHIVFLELSSILEPSRQPKSDKVAILSDAARVVIQLRNEAKRLKEMNDELQAKVKELKGEKNELRDEKNRLKEEKEKLEQQVKVANIQPSFLPQAPDAKGQVGSHKLIPFIGYPGIAMWQFMSPAAVDTSKDHLLRPPVA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02703 239 Gene3D - 80 165 IPR036638 GO:0046983
Gma13g02703 239 CDD bHLH_AtILR3_like 81 164 - -
Gma13g02703 239 PANTHER BHLH TRANSCRIPTION FACTOR 1 239 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gma13g02703 239 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 239 - -
Gma13g02703 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 151 IPR036638 GO:0046983
Gma13g02703 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 135 IPR011598 GO:0046983
Gma13g02703 239 Coils Coil 125 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02703 Gma-Chr13 41709586 41711606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02703 34 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 54.378 5.15e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02703 - - gmx:100803143 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02703 13 41709586 41711606 Gma13g02703 13 41709586 41711606 ECH
Gma13g02703 13 41709586 41711606 Gma12g01855 12 39178004 39180310 GST