Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02682 ATGGTGAGAACCCCTTGTTGCGACAAAAATGGACTGAAGAAAGGCCCGTGGACACCAGAGGAAGATAGGAAGTTGATCGATTATGTCACTAAGTATGGACACTGGAATTGGCGCTTACTCCCCAAGTTTGCAGGTCTTGCAAGATGTGGGAAGAGTTGCAGGCTGAGATGGCTGAACTATCTAAGGCCAGATGTTAAAAGAGGGAACTTTAGTCATGAAGAAGAAGAAACCATTGTCAGACTTCACGAAAAGTTGGGTAATAGATGGTCTGTGATTGCCACTCATTTACCGGGAAGAACAGACAATGAAATAAAGAACCACTGGCACACCCCTCTCAGAAAGCGTTTTGGAAAAAACGCAGTTCACTCCAATAAAAAAGTGAAAGCCACAAAATCAAATAGTTCTGAGTCCAAGCAAGATAAGGACTCAATTGAGAACG 439 0.4328 MVRTPCCDKNGLKKGPWTPEEDRKLIDYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPDVKRGNFSHEEEETIVRLHEKLGNRWSVIATHLPGRTDNEIKNHWHTPLRKRFGKNAVHSNKKVKATKSNSSESKQDKDSIEN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02682 146 Gene3D - 13 66 - -
Gma13g02682 146 CDD SANT 69 110 IPR001005 -
Gma13g02682 146 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma13g02682 146 CDD SANT 16 61 IPR001005 -
Gma13g02682 146 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma13g02682 146 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gma13g02682 146 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma13g02682 146 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma13g02682 146 MobiDBLite consensus disorder prediction 129 146 - -
Gma13g02682 146 MobiDBLite consensus disorder prediction 115 146 - -
Gma13g02682 146 Gene3D - 69 145 - -
Gma13g02682 146 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma13g02682 146 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 137 - -
Gma13g02682 146 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma13g02682 146 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 137 - -
Gma13g02682 146 SMART sant 13 63 IPR001005 -
Gma13g02682 146 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02682 Gma-Chr13 41495325 41504690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02682 1 144 MYB Transcription Factor Family AT2G31180 62.500 2.90e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g02682 Myb_DNA-binding 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02682 K09422 - gmx:100815765 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02682 13 41495325 41504690 Gma13g02682 13 41495325 41504690 ECH
Gma13g02682 13 41495325 41504690 Gma12g01877 12 39434174 39436588 GST
Gma13g02682 13 41495325 41504690 Gma12g00936 12 9641997 9643461 PCT
Gma12g00935 12 9620869 9623223 Gma13g02682 13 41495325 41504690 PCT
Gma06g02677 06 50396257 50398354 Gma13g02682 13 41495325 41504690 PCT