Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02658 ATGAAAGCAATGTTGTCCACAATCCTTACTCCACTTAACATTATGAATGCTTTGTGTTTGAGCAGGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAAAACCGACACATCATGAGGAACGTGAAGGGACCCGTGAGAGAAGGAGACATTCTCACCCTACTTGAGTCTGAAAGAGAAGCAAGAAGGTTGCGCTAG 264 0.4621 MKAMLSTILTPLNIMNALCLSRMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02658 87 Pfam Ribosomal protein S28e 26 86 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma13g02658 87 SUPERFAMILY Nucleic acid-binding proteins 23 87 IPR012340 -
Gma13g02658 87 ProSitePatterns Ribosomal protein S28e signature. 78 86 IPR028626 -
Gma13g02658 87 PANTHER 40S RIBOSOMAL PROTEIN S28 23 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma13g02658 87 Hamap 30S ribosomal protein S28e [rps28e]. 15 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma13g02658 87 PANTHER 40S RIBOSOMAL PROTEIN S28 23 87 - -
Gma13g02658 87 Gene3D - 20 87 IPR012340 -
Gma13g02658 87 CDD S1_S28E 28 87 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02658 Gma-Chr13 41315054 41315639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02658 23 87 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 7.76e-36 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02658 K02979 - gmx:100811085 103.99