Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02642 ATGGCTGCAGCGAACAGTGGCAAATTCGACGTGGGAGATGAAACTCACAAGAATTCACGAAAGGGTAGTGAAAGCCAAGATTGGGAGATTGAGAAGGGAAAGGGCGTGGATTGTTCAAGCTCACAGAGGCGTCAATGGAAGCCAGTTTTTGATGACGCTTCCATCTCATACAATAGACCTCTCAAGAAAATCCGCAGCCCCGATCGCCAAGAAACAAACCAATCTTCTTCTTCTTCTTCTTCTACTACTCCTTTTGAACCTTCTCCACTCTCTAATCCTCCTCCTTCCTCTTCAAGAATAGTGTTTCCTTTTGCTTTTGATGGTTCCCAACACCCCATGCAATTCCCTCACCAATTTGGAACCACAACAAACTCACCTTTCCCTCACCCATCTTTCCAAAACCAGCAACACCAGATGATATCATTTGGGTCTTCCCAACAACATAACAATCTCGCATATCCACCAATCATAGCCCGAGATTCTTCTTCACTTGTACATCATCATCATCAACAACAACAACAGCATCAGCAGCAACTTCTTCAGTATTGGAGTGGCGCGTTGAATCTAAGTCCAAGAGGAATGTTAACAAGGTTGGGGCCAGATGGAAGGCCATTGTTTAGTCCTCCAACACAGCGCATAAACACAACAAAACTCTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAAATCCGTCTTCCACGAAACAGAACGCGTCTCTGGCTAGGCACATTTGACACGGCCGAAGACGCCGCCATGGCCTACGACCGCGAAGCCTTCAAGCAACGAGGAGAGAATGCAAGGCTCAATTTCCCCGAATTGTTCTTCAACAAGGACAAAAAAGAACAAGGAGAAGAAGAAGCTTCTTCGCCGGTTCTTTCGGCTATTGCAAAGCAGAATGAACCTCCTCCTGCCCACCACCGTGACGTCACGATAGAAGAGTCTAACGAAAATGACTCAGGTGACGCCACCGTGAGCGACGAGGTTCATGCTCCTGCTGCTACAGCGAGTTCCGAAGGGGTTTCTCAGGAACTGGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCTGCTGCTTGGGGTCCTGGTAGTCCCATGTGGGATGATTTGGATGCCACCAATAATCTTCTTTGCCAATCACACATTCCTTTTTCCAATCCCAATCAACAACAGTTCAATGATGCTGATGATGCTCAGAGACAGGAACAAAACACAGGACCAGGTTACCTATGGAAGGATCAGGATTGA 1260 0.4738 MAAANSGKFDVGDETHKNSRKGSESQDWEIEKGKGVDCSSSQRRQWKPVFDDASISYNRPLKKIRSPDRQETNQSSSSSSSTTPFEPSPLSNPPPSSSRIVFPFAFDGSQHPMQFPHQFGTTTNSPFPHPSFQNQQHQMISFGSSQQHNNLAYPPIIARDSSSLVHHHHQQQQQHQQQLLQYWSGALNLSPRGMLTRLGPDGRPLFSPPTQRINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKQRGENARLNFPELFFNKDKKEQGEEEASSPVLSAIAKQNEPPPAHHRDVTIEESNENDSGDATVSDEVHAPAATASSEGVSQELVWGEMSAWFNAIPAAWGPGSPMWDDLDATNNLLCQSHIPFSNPNQQQFNDADDAQRQEQNTGPGYLWKDQD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02642 419 ProSiteProfiles AP2/ERF domain profile. 218 275 IPR001471 GO:0003700|GO:0006355
Gma13g02642 419 MobiDBLite consensus disorder prediction 1 102 - -
Gma13g02642 419 MobiDBLite consensus disorder prediction 284 328 - -
Gma13g02642 419 Gene3D AP2/ERF domain 218 276 IPR036955 GO:0003700|GO:0006355
Gma13g02642 419 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 399 - -
Gma13g02642 419 MobiDBLite consensus disorder prediction 70 86 - -
Gma13g02642 419 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 399 - -
Gma13g02642 419 MobiDBLite consensus disorder prediction 385 419 - -
Gma13g02642 419 SUPERFAMILY DNA-binding domain 218 276 IPR016177 GO:0003677
Gma13g02642 419 MobiDBLite consensus disorder prediction 10 38 - -
Gma13g02642 419 CDD AP2 217 277 IPR001471 GO:0003700|GO:0006355
Gma13g02642 419 PRINTS Ethylene responsive element binding protein signature 219 230 IPR001471 GO:0003700|GO:0006355
Gma13g02642 419 PRINTS Ethylene responsive element binding protein signature 241 257 IPR001471 GO:0003700|GO:0006355
Gma13g02642 419 SMART rav1_2 218 281 IPR001471 GO:0003700|GO:0006355
Gma13g02642 419 Pfam AP2 domain 219 267 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02642 Gma-Chr13 41184441 41186513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02642 183 390 AP2-EREBP Transcription Factor Family AT2G20880 50.472 1.08e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g02642 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02642 - - gmx:100809887 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02642 13 41184441 41186513 Gma13g02642 13 41184441 41186513 ECH
Gma13g02642 13 41184441 41186513 Gma12g01917 12 39796476 39798796 GST