Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02625 ATGGGGTGCATAGCTTCCAAGAGTGCAGCTGTTGAAGACAGCAGGGAAGGTGTGGCAAGGGAATTCACTTCATCCAGCAAAAGGGCGGCCTCGAAGATGAAGGCTTCCGTATTGAATTCGGAGAAAAGGATCGATGGGGTTTGGGGGAAAGATAAGATTTTGGATGGTGCTGATATGAAAGTTTCATTGATTGACAAGGGATCCAGTGGTTCGATGCGGTCGAGTAATAATAAGAACGGGAAGAAGAAAAAGGAGAAACCTGAATTGGCTGTTCTTGATCATCCTGGTCTTGGAAGGGTTCCAAAGGGTTTAGAAGGAGAGCAAGTTGCAGCAGGGTGGCCAACTTGGTTTTCTTCTGTTGCTGGTGAAGCTGTCCAAGGGTGGATACCGCGGAAGGCGGATACTTTTGAGAGGTTTCATAAAattggccaaggaacctacagtactgtgtataaggctcgtgatttgactgaccaaaagatcgttgcgttgaagagggtacgctttgataattgtgatgctgagagtgtcaagtttatggcaagggaaatccttgttctgcgtaggcttgaccatccaaatgtaataaagttggaaggcttgataacatcgaagacctctcgcagcttgtaccttgtttttgaatacatggaacatgatcttacaggacttgcatcaagtcctagcattaagttttctgaaccacaggtAgttaaatgctacatgcaacagcttcttagtggattggatcattgtcatagtcgtggtgtcctccaccgcgacataaagggctcaaatcttctcattgacaataatggcatcttaaagattgcagattttggtctggcaaattttattgacccccatcacaaggttccattgaccagccgtgtagtaactctgtggtatagaccaccagaactcttacttggagcatctaattacggagttgctgtggatttgtggagcactggttgcatactgggggaactgtatcgtagcagacctatattacctggaaaaacagaggttgaacaattgcataggatttttaaactttgtggctcaccatctgaggactattggtgcaagctgcggacgccacattcaacagtattcaggcctcCTCACCATTATAGGCGTTGTGTTGCTGAAACATTTAAAGAATATCCATCTGCTGCCACAAGGCTTATCGAAACCCTACTTTCTTTAGATCCCACACTTCGAGGAACAGCAGCTGCAGCCCTTAAGAGTGAGTTCTTTTCATCGGAACCCCTTCCTTGTGATCCATCAAGCTTACCAAAATATCCTCCCAGCAAAGAGATTGACACTAAATTGTGGGAAGAAGCAACAAGGCATGGAGCTGATAGGGAAAAGGAGCAAAAATTTAGACCAGGAGGTCGACAAGAGAAAGAACCTCAGACATTTATATTATCCAAAGACAGTGCCGACTCCTGCATATCAATGCAGCAAGggcaacgccttccaaactcaaggagccggaatgagttcttcaatcctCACAGAGAACCTGTGTCTGGACATTTGGTTTTTCCACAAAAACAGTCAGAAGATCATAAAGAAACGCTAAATTATTTCTCCGGCCCTCTTTATCAGAGGCCTTTGCATTCAGGTCCATTGGTTCCAGGTTATGGCTGTGAAATGGTTGGAAGGGAAGCCGGTGAACGGCGGCCTCATGTTTCAAACAAAGTCAACCTACCAAAACTATCTGGGTTAGTGGCATCTAGGACTTCTTCATTGTCTGGAGATCAAAAAGAAAATCCAGTTCCCTCGAGGCCCCGGGAAACAATTGAAGTACAAATATCTTTGGAGTCAACTAATGGATCAGAGTCAAGAAGAAGGCATGATACCAAACACCATTCTCAGAGAATTGATCCCAGGAAAATTGAAAATGGAAAAGTTTCAACTGAAACCTTAATTCAGGATGGGCATGGATCCATGGGAAACAATATCTACCACCTCTCTGGTCCGTTACTGGTTTCTTCAAACAACATAGATCAGATGCTCAAAGAGCGTGATCGAAAGATCCAAGAATATTCAAGACGAGCAAGAATGTACAAGTCTGGTTTGATCCAAACAAGCTAG 2106 0.2844 MGCIASKSAAVEDSREGVAREFTSSSKRAASKMKASVLNSEKRIDGVWGKDKILDGADMKVSLIDKGSSGSMRSSNNKNGKKKKEKPELAVLDHPGLGRVPKGLEGEQVAAGWPTWFSSVAGEAVQGWIPRKADTFERFHKIGQGTYSTVYKARDLTDQKIVALKRVRFDNCDAESVKFMAREILVLRRLDHPNVIKLEGLITSKTSRSLYLVFEYMEHDLTGLASSPSIKFSEPQVVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLANFIDPHHKVPLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGELYRSRPILPGKTEVEQLHRIFKLCGSPSEDYWCKLRTPHSTVFRPPHHYRRCVAETFKEYPSAATRLIETLLSLDPTLRGTAAAALKSEFFSSEPLPCDPSSLPKYPPSKEIDTKLWEEATRHGADREKEQKFRPGGRQEKEPQTFILSKDSADSCISMQQGQRLPNSRSRNEFFNPHREPVSGHLVFPQKQSEDHKETLNYFSGPLYQRPLHSGPLVPGYGCEMVGREAGERRPHVSNKVNLPKLSGLVASRTSSLSGDQKENPVPSRPRETIEVQISLESTNGSESRRRHDTKHHSQRIDPRKIENGKVSTETLIQDGHGSMGNNIYHLSGPLLVSSNNIDQMLKERDRKIQEYSRRARMYKSGLIQTS 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02625 701 SMART serkin_6 136 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02625 701 MobiDBLite consensus disorder prediction 452 473 - -
Gma13g02625 701 Pfam Protein kinase domain 136 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02625 701 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Gma13g02625 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Gma13g02625 701 MobiDBLite consensus disorder prediction 578 593 - -
Gma13g02625 701 MobiDBLite consensus disorder prediction 574 630 - -
Gma13g02625 701 Gene3D Transferase(Phosphotransferase) domain 1 219 460 - -
Gma13g02625 701 MobiDBLite consensus disorder prediction 1 33 - -
Gma13g02625 701 CDD STKc_CDK9_like 136 421 - -
Gma13g02625 701 MobiDBLite consensus disorder prediction 64 87 - -
Gma13g02625 701 PANTHER CYCLIN-DEPENDENT KINASE 1 693 - -
Gma13g02625 701 ProSiteProfiles Protein kinase domain profile. 136 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g02625 701 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Gma13g02625 701 PANTHER CELL DIVISION PROTEIN KINASE 1 693 - -
Gma13g02625 701 SUPERFAMILY Protein kinase-like (PK-like) 130 429 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02625 Gma-Chr13 41028215 41033580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02625 128 464 Core Cell Cycle Gene Families AT5G10270 49.292 4.47e-110 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma13g02625 Pkinase 6.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02625 - K08819 gmx:100781209 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02625 13 41028215 41033580 Gma13g02625 13 41028215 41033580 ECH
Gma13g02625 13 41028215 41033580 Gma12g01936 12 39984001 39990772 GST
Gma13g02625 13 41028215 41033580 Gma12g01016 12 11393921 11400064 PCT
Gma13g02625 13 41028215 41033580 Gma06g02622 06 49558005 49563793 PCT
Gma12g01016 12 11393921 11400064 Gma13g02625 13 41028215 41033580 PCT
Gma06g02622 06 49558005 49563793 Gma13g02625 13 41028215 41033580 PCT