Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02615 ATGCCAGCCCAGAAGCGCTCTCTGCCCGAGTCACTCGACGAAGGGGACACTTCGCAGCAGAACCTCTTCCATTCTCGACATGCGAAGCAACAACAACAACAACCAGACCAGCCGCAGGAACACGACGAGGAAAACCACGAGGATGagaacgaagaagaagaagaagaaggagatgaagaagaaggagaagaagaagaagaagaggaggaggaggaggaggaggaggaagaagaagaagtagaagaagCGGCGCAAAATGACAACAACGACGAGGAAAAACCACAGGATTCCGACGATATCCCATCTTCTGGCTCTGAAGAAAAACCCGAATTTGTGTATGTGGAACTTCTGGAAATTCGTAAGGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACAAGAACCGTTATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAATCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACATTGCGCCAGTCGTCGTTCCTTGAGAGACGATCCAAATTATGATGCCCTAATTTCTGCTTTATATCCAGATATTGAGAAGTACGAAGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATAGCAAAAGTAGTTCAACGGCAATCTGAAGCATTGGTTAAGAGACGTAAAGATACACCAGGTACATTTGTAACAAGATCACAGCGTAATCAACGAAATAGGAGACAAACTCAAGCAATTGAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAGAACTCATCTTCAGATGATGAACGGAGTACAGAACACCGGCAGAGAAGGCGAAAGAGATGGGCCAGAGTTCGCTCCTCTCAACCCTCATCTTCCATGACAAGTCCTGATGGTGGATGCAATGATAGTGATATGGATATAAGTAGAGAAAATCGTGGAATTTCTTCAAGGCAGGTATCAAAACATGGAAAGCTTACTTGGGGAAGGGGTGGATTTAGAAGTAACACTCGGCATGGTAGTGGTGGCAGTAGCAATAGCAAAAGTTCTCGCAGTAGTCGATTATCTAAGTTTGTTGATCATCTCCGCAACTTGGATGAAAACACTGATGAGTTTGATGTCCATCTCATGCTTGTTTCTCTTGACCAACAAAGTACATCAAGTTTGCAGCAACCTTACCTTTGCTGTCGACCAACTTTGTCTGTCAGGCACCTTTACGAACACGTTGCTCGTCAGACACATTTGCCAGTTGAAGGAATTGAGATACTGGCAGTCAAAGGATGCTGCAGTACAAACCGTGACAAGTCAACCAATGAGAATTCAGACCTGGCATACGATGAGCTATCAACGCTGGTTATAGATCCACACAAAGATGAACTGGAAATTTTGCAAGGACATGAGACTCTGTCAGGGCTTAGATCCAAATGCATATCTAAGATGGGACATTTGATTATTGCATACAATCAGAAGGAGGTATCATAG 1506 0.409 MPAQKRSLPESLDEGDTSQQNLFHSRHAKQQQQQPDQPQEHDEENHEDENEEEEEEGDEEEGEEEEEEEEEEEEEEEEEVEEAAQNDNNDEEKPQDSDDIPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPGTFVTRSQRNQRNRRQTQAIEGSEDNEEENDNNEKNSSSDDERSTEHRQRRRKRWARVRSSQPSSSMTSPDGGCNDSDMDISRENRGISSRQVSKHGKLTWGRGGFRSNTRHGSGGSSNSKSSRSSRLSKFVDHLRNLDENTDEFDVHLMLVSLDQQSTSSLQQPYLCCRPTLSVRHLYEHVARQTHLPVEGIEILAVKGCCSTNRDKSTNENSDLAYDELSTLVIDPHKDELEILQGHETLSGLRSKCISKMGHLIIAYNQKEVS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02615 501 PANTHER OS11G0578200 PROTEIN 1 499 IPR044592 -
Gma13g02615 501 MobiDBLite consensus disorder prediction 345 361 - -
Gma13g02615 501 MobiDBLite consensus disorder prediction 42 86 - -
Gma13g02615 501 MobiDBLite consensus disorder prediction 238 252 - -
Gma13g02615 501 MobiDBLite consensus disorder prediction 87 108 - -
Gma13g02615 501 ProSiteProfiles Zinc finger RING-type profile. 125 165 IPR001841 -
Gma13g02615 501 MobiDBLite consensus disorder prediction 13 35 - -
Gma13g02615 501 MobiDBLite consensus disorder prediction 294 310 - -
Gma13g02615 501 MobiDBLite consensus disorder prediction 312 326 - -
Gma13g02615 501 MobiDBLite consensus disorder prediction 267 283 - -
Gma13g02615 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 188 IPR013083 -
Gma13g02615 501 MobiDBLite consensus disorder prediction 226 362 - -
Gma13g02615 501 Coils Coil 43 93 - -
Gma13g02615 501 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 499 - -
Gma13g02615 501 CDD RING-HC_RING1_like 125 165 - -
Gma13g02615 501 Pfam Zinc finger, C3HC4 type (RING finger) 124 164 - -
Gma13g02615 501 Coils Coil 191 222 - -
Gma13g02615 501 MobiDBLite consensus disorder prediction 1 108 - -
Gma13g02615 501 SUPERFAMILY RING/U-box 111 179 - -
Gma13g02615 501 ProSitePatterns Zinc finger RING-type signature. 141 150 IPR017907 -
Gma13g02615 501 SMART ring_2 125 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02615 Gma-Chr13 40952972 40959194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02615 118 188 C3H Transcription Factor Family AT3G23060 35.135 5.23e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02615 K10695 - gmx:100801911 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02615 13 40952972 40959194 Gma13g02615 13 40952972 40959194 ECH
Gma13g02615 13 40952972 40959194 Gma12g01940 12 40040293 40051805 GST