Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02614 ATGAGCGGTGTCTGTGCTGAGCAGCACAAATTTTACCCTTCTCACCAACTCCTTTCTCCAAAGAAAACCCTCAGAGAAATTGACATCCCTCCGAGGAAGCTCCTCACTCGCCGTGCCGCCAAATGCGTCGGTGGCACCGACGTGTACTCTGAGGAAACCATGCAGCAGAAGTTCCTCCCTTCCAACGATTCCGACGAGGACGACCCTTACTCGTCGGACCACTTCCGGATGTTCGAGTTCAAGGTCCGCCAGTGCACCCGCAGCCGGAGCCATGACTGGACCGACTGCCCTTTTGCACATCCGGGCGAAAAGGCACGCCGCCGTGACCCACGGCGGTACCACTACTCAGGAACAGTCTGTCCGGAGTATCGTCGTGGAGGGTGCAGCCGTGATGATGCATGCGAATACGCTCATGGCGTGTTCGAATGTTGGCTGCACCCTTCCAGGTACAGGACAGAGGCCTGTAAGGATGGCAGGAACTGCAAGAGAAAGGTGTGTTTTTTCGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACATCTTCACCCTCTTCAAATGACATGCCATGCAAGAAGAACCTTAAACAAGTGTTAAACCATGCTTCAAAAACAAACAACAACAACAACTGTTGCTTGTTTTGCCATTGTGGTGCTTCTTCTTCAGCCTCTCCAACCTCCACACTCTTCGGCATGTCGCATTTCTCGCCACCACTATCACCTTCCTCGTCCTCTTCACCACCTCCTTCTCCGTTGAAACCCAGAAACGCGGTTTCTCCTATTTCCCGTTACAGTGCTGTGAATGTGAACCCTCATCACGTGGTGAGTTACAAAGACGTGTTCACTGAATTGGTGAATTCTTTGGAGCGTTTGAGTTTCAACGAGGGTTCACCTGTTTCCGGTGCAAAAGCACCGAACTTTCCTTGGCTTGATGTTTCTCTGAACTGTGAGGAACAGCAACAGCAACAACAAAACCCTTTCATAGTTCCTTCTTTTGGCTGCGAAGATCAGCAGCAACAGAACCAGTTTATTTTTTCACCACCGTCCATTCAGACACCGACAAATGGGAAGTTCTGTAGCAACAGATTCATGGGCAACGACAACAACAACAAGGTTGTCGGTGGTGCTGACGTTAATGGCCCAGATCTGGCGTGGGTGAATGAGTTGCTGATGTAG 1176 0.5085 MSGVCAEQHKFYPSHQLLSPKKTLREIDIPPRKLLTRRAAKCVGGTDVYSEETMQQKFLPSNDSDEDDPYSSDHFRMFEFKVRQCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRDDACEYAHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQLRILPVTSSPSSNDMPCKKNLKQVLNHASKTNNNNNCCLFCHCGASSSASPTSTLFGMSHFSPPLSPSSSSSPPPSPLKPRNAVSPISRYSAVNVNPHHVVSYKDVFTELVNSLERLSFNEGSPVSGAKAPNFPWLDVSLNCEEQQQQQQNPFIVPSFGCEDQQQQNQFIFSPPSIQTPTNGKFCSNRFMGNDNNNKVVGGADVNGPDLAWVNELLM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02614 391 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Gma13g02614 391 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Gma13g02614 391 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 390 - -
Gma13g02614 391 Gene3D - 115 178 - -
Gma13g02614 391 PANTHER UNKEMPT FAMILY MEMBER 26 390 IPR045234 -
Gma13g02614 391 MobiDBLite consensus disorder prediction 237 257 - -
Gma13g02614 391 MobiDBLite consensus disorder prediction 241 255 - -
Gma13g02614 391 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02614 Gma-Chr13 40943733 40944908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02614 45 252 C2H2 Transcription Factor Family AT5G12850 45.714 2.66e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma13g02614 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02614 K23047 - gmx:100801371 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02614 13 40943733 40944908 Gma13g02614 13 40943733 40944908 ECH
Gma13g02614 13 40943733 40944908 Gma12g01941 12 40059716 40060894 GST