Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02607 ATGGCTCTGTTATTCAAGGATCCGTCGAAGATTTCAGCGTATCGAGATAGAAGGTTCCCCGGAACGCAAGAGGAGTTTGAGCACGCGCTTGTGACCTCAACCACCGTTTACGTGGGGAACATGTCTTTTTACACGACGGAGGAGCAAGTTTACGAGCTCTTCTCGCGTACTGGGGAAATAAAAAAGATCATCATGGGCTTGGACAAGAACACCAAAACGCCCTGCGGCTTCTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACGATACTTGATGATCGTCCCATTCGAGTTGATTTTGATTGGGGATTTCAGGAAGGAAGACAATGGGGTCGTGGGAGGAGCGGTGGCCAGGTGAAAATCTCTTGTGCCTGTGTTTCTGTGGCTATTTTTTTTTTAGGTGGCTACGGGAAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCAACTTCCTATGGTAGACATGGTGGAGGAGGTGGTCATGGTCATGGTGGTTCCCATCGACATGGTAGAGATTACTATAGGAAGAGACACCGAGATGATGAGCGCCACACACACGAGTCCTCAAAAAGAACTTCAGATCATGAGTCTCGAAGGAACACTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGAGGACGAGGAAGATGATAGAAAAAGACGGGCTTAA 774 0.4625 MALLFKDPSKISAYRDRRFPGTQEEFEHALVTSTTVYVGNMSFYTTEEQVYELFSRTGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVKISCACVSVAIFFLGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPTSYGRHGGGGGHGHGGSHRHGRDYYRKRHRDDERHTHESSKRTSDHESRRNTDHESRPEKNPRFRESGDSDEDEEDDRKRRA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02607 257 MobiDBLite consensus disorder prediction 173 257 - -
Gma13g02607 257 CDD RRM_NCBP2 36 113 IPR034148 -
Gma13g02607 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Gma13g02607 257 SMART rrm1_1 35 108 IPR000504 GO:0003723
Gma13g02607 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Gma13g02607 257 Gene3D - 6 256 IPR012677 -
Gma13g02607 257 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 218 IPR027157 GO:0000339|GO:0005846|GO:0045292
Gma13g02607 257 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 218 - -
Gma13g02607 257 SUPERFAMILY RNA-binding domain, RBD 27 127 IPR035979 GO:0003676
Gma13g02607 257 MobiDBLite consensus disorder prediction 201 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02607 Gma-Chr13 40888686 40892120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02607 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 2.06e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02607 K12883 - gmx:100776217 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02607 13 40888686 40892120 Gma13g02607 13 40888686 40892120 ECH
Gma13g02607 13 40888686 40892120 Gma12g01948 12 40101734 40105658 GST