Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02605 ATGTTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAGGAGGGCAAGGAGAGATATTGGAGAGTGTCTCAATTGGAACCGATGATTTTGCTGACCTTTCCGAAGGGAACTTGCTTGAAAGCATCAACTTCGATGATTTCTTCATGGGAATCAATGATGATGGAGATGTCTTGCCGGATCTGGAGATGGACCCTGAGATGCTTGCTGAGTTCTCCCTCAGTACCGAGGATTCCGAGATAGCCTCATCGTCAGTTTCAGTGGCAAATAACAACAATGATGGGAATAATATAGTTACTACTACTGAAAAACAAGATGATGAGGTTATTATTATAGCATCCAATTCTTCTTCAGATTCGGGTTCGAGTCAAGGGGAGGAGATAGTAAGCAAGAGTGATGAATCAGAGGTGGTGGTGAATCCATCCCCTAAGGAAAGTGAGAAAGGAAGAAAATCATCAAATCATGCATCAAGGAATAATAATCAAGGGAAGAGAAAGGTTAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCTAGGATTTTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCAAGCCACCTTCAAAAATATAGATCGCACAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCAAGGTGGAGTCAAAGGAAGCAATTGTTGGGTGCAGCAGGTGCAGGTAGAGGAGGAGGAAGCAAGAGAGAAGTAAACCCTTGGCTTGCACCAACCATGGGCTTCCCTCCCATGTCACCAATGCACCACTTTAGACCTTTACATGTATGGGGGCATCACAACATGGACCAGTCTTTCATGCACATGTGGCCTAAACATCCACCATACTCGCCATCGCCGCCTGCATGGCCACCACGAACCGCTCCGTCTCCGCCGTCTCCGGACCCTCTATATTGGCACCAACATCAACTGGCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGAGATTTGGGTCTCAAACTGTTCCGGGAATCCCACCACGCCATGCAATGTACCAAATTGTAGATCCAGGCATTGGCATCCCGGCCAGCCAACCGCCACCTCGACCCCTTGTCGACTTTCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGTTTTATCAAAACCATGGCTGCCACTACCTCTTGGCCTTAAAGCTCCAGCACTTGATGGTGTAATGGGTGAATTACAAAGACAAGGGATTCCCAAAATCCCTCCCTCTTGTGCTTGA 1311 0.4828 MLAVSPLRSTRDEGGQGEILESVSIGTDDFADLSEGNLLESINFDDFFMGINDDGDVLPDLEMDPEMLAEFSLSTEDSEIASSSVSVANNNNDGNNIVTTTEKQDDEVIIIASNSSSDSGSSQGEEIVSKSDESEVVVNPSPKESEKGRKSSNHASRNNNQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQLLGAAGAGRGGGSKREVNPWLAPTMGFPPMSPMHHFRPLHVWGHHNMDQSFMHMWPKHPPYSPSPPAWPPRTAPSPPSPDPLYWHQHQLAPNAPTTGTPCFPQPLTTTRFGSQTVPGIPPRHAMYQIVDPGIGIPASQPPPRPLVDFHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGIPKIPPSCA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02605 436 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 436 - -
Gma13g02605 436 Pfam Myb-like DNA-binding domain 168 217 IPR001005 -
Gma13g02605 436 MobiDBLite consensus disorder prediction 82 168 - -
Gma13g02605 436 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 436 IPR044825 GO:0003700|GO:0045893
Gma13g02605 436 MobiDBLite consensus disorder prediction 82 127 - -
Gma13g02605 436 MobiDBLite consensus disorder prediction 128 153 - -
Gma13g02605 436 Gene3D - 162 223 - -
Gma13g02605 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 221 IPR017930 -
Gma13g02605 436 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Gma13g02605 436 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 165 219 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02605 Gma-Chr13 40873966 40878207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02605 1 331 G2-like Transcription Factor Family AT5G44190 38.655 1.30e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma13g02605 Myb_DNA-binding 5.6e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02605 13 40873966 40878207 Gma13g02605 13 40873966 40878207 ECH
Gma13g02605 13 40873966 40878207 Gma12g01950 12 40117481 40121961 GST
Gma06g02596 06 49250940 49256208 Gma13g02605 13 40873966 40878207 PCT