Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02600 ATGCTGGAAAAGATGGATGATGGAGAAATCTCAAATGCTTTCCCTCACCAGAACCCTTCAACTGCTGCATCTAACAATCAGCCTCCTACTTTGAAGAGGAAGAGAAACCTCCCTGGAAATCCAGATCCCGAAGCTGAAGTCATAGTCCTATCACCGAAGACTCTAATGGCCACAAACAGATTCGTGTGTGAAATCTGTCTCAAGGGTTTCCAAAGGGACCAAAACCTTCAACTCCATCGCAGAGGGCACAACCTTCCTTGGAAGCTGAAGCAAAGAACAACCAAAGAAGTAAGGAAGCGAGTTTATGTGTGTCCAGAGAAGACATGTGTCCATCACCACCCTTCAAGGGCCCTGGGAGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAACACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTTCAGTCAGATTGGAAAGCACACTCAAAAACATGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGCGATGCCTTAGCAGAAGAAACAGCTAGAGTGAACGCAGCATCAAACATTAGCAACTACAGCATCATGCAAAATCCCCTAGGTCCTAACATGACAACCCAATTTTCATCATTTTTCAAGCCAAATTCATGCTCTGATCAGGAGCCAGCACCAGGTAACCAAACATCTAATAAGGGCCTATCCCTTTGGATGACTCAAACATCTCAGGCTCATGAGGCAATGGCTAACAACAATAATTTGCATGAATTTCATCAACTTGGGTCTGTTACAAGCCCAACAGCAATTTATGGTACTAGTGGGAATCCACTTGCTTCATGCTCAAATCCACCACCCTCTAATTACCAGCTAAATTGGGTGTTTGGAAATAAACTCTCCTCCAATGGAAGCCATCAAGAGTTAACTAGCACTGCTTCACTTCCACTAGTCAATAACATTGTTAAGGATAACCCAAACCTTCAACTCATAAGTGTCCCTTCCTTGTATAGCTCACAACACCAATCCCATCAAGCAAGCTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAGTTGGGACAACTTCATCGGACCCATCATCATTATTCCATGGGAGCATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGCATGTACGGTTCAAGCTCAGTACTCACAACAAGTCATCATGGGAGTGAGGCAGAGAATAATAATAATAATTATTCAGGTGATTTGTCACAAATACCCCCTACAAAAAGACGGCACGTACAGAATGAGGAGAGTGCATGGGGACAAACTAGGGACTTTCTTGGTGTTGGTGGTGCCAACCATTTGCCACCCTTCATCAACCAACGGATGGATTTGATTTGA 1425 0.4449 MLEKMDDGEISNAFPHQNPSTAASNNQPPTLKRKRNLPGNPDPEAEVIVLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTTKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNISNYSIMQNPLGPNMTTQFSSFFKPNSCSDQEPAPGNQTSNKGLSLWMTQTSQAHEAMANNNNLHEFHQLGSVTSPTAIYGTSGNPLASCSNPPPSNYQLNWVFGNKLSSNGSHQELTSTASLPLVNNIVKDNPNLQLISVPSLYSSQHQSHQASSANMSATALLQKAAQVGTTSSDPSSLFHGSIGLKCNSPGQDGNKFCGMYGSSSVLTTSHHGSEAENNNNNYSGDLSQIPPTKRRHVQNEESAWGQTRDFLGVGGANHLPPFINQRMDLI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02600 474 MobiDBLite consensus disorder prediction 1 40 - -
Gma13g02600 474 Gene3D Classic Zinc Finger 130 196 - -
Gma13g02600 474 PANTHER F-BOX ASSOCIATED PROTEIN 5 473 - -
Gma13g02600 474 MobiDBLite consensus disorder prediction 13 33 - -
Gma13g02600 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 473 - -
Gma13g02600 474 SUPERFAMILY beta-beta-alpha zinc fingers 132 181 IPR036236 -
Gma13g02600 474 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Gma13g02600 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Gma13g02600 474 Gene3D Classic Zinc Finger 39 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02600 Gma-Chr13 40828951 40831672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02600 42 458 IDZ Gene Family AT5G44160 51.910 1.27e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g02600 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02600 K25870 - gmx:100778666 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02600 13 40828951 40831672 Gma13g02600 13 40828951 40831672 ECH
Gma13g02600 13 40828951 40831672 Gma12g01955 12 40166215 40169328 GST