Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02589 ATGGGTTACTTGGACGATGATCATGATCATGACACATTCCACGACCACAACGACTTCAACAGAAGGATACTCATCATGGCTATAGTTTCCTTATCAGTGGTATTGGTTCTTGTCTTTGCACTTCACCTCTACGCAAGGTTTTTCCTCCGCCGCAGAGCCGCCATATACCAACTCAGCCTCAACGTGGCACACGCACACGCCGAGCCAGACAACAACACAGGGCTCGACCCTGTCCTCATCACCACCCTCCCCACCTTCCCCTTCAAACAACCAAACAACGATTCTGTGGAGTGTGCCGTGTGCTTGAGCGTTCTAGAAGATGGAGAACAAGTGAGGCTTCTTCCCAATTGCAAACACAGCTTCCACGTCGGTTGCATCGACACGTGGCTTGCTTCGCACTCCACGTGTCCCATTTGCCGGACCAAGGCCGAACCGGTCCGGCTCGAACCGCAGCCGCGTGAGGGCCCCACCGGCTCGGTTCTTCTCGATGTTGTTGCACCCACGGCTCCGCTATTGTTTGAAAACGTGGAAGGAACCTTGGATGGTGCTAATAATAATGGGTCACCTAAGGTTAGTGGTTCGAATTCGAGGTTGAGTTCGTTCAGAAGGATTCTTAGTAGGGACAGATCGATGAGGAGGATTCAACCTTCTAGCCATGATGATGTTGAACATGATTTAGAGAGCCAGTGA 690 0.5159 MGYLDDDHDHDTFHDHNDFNRRILIMAIVSLSVVLVLVFALHLYARFFLRRRAAIYQLSLNVAHAHAEPDNNTGLDPVLITTLPTFPFKQPNNDSVECAVCLSVLEDGEQVRLLPNCKHSFHVGCIDTWLASHSTCPICRTKAEPVRLEPQPREGPTGSVLLDVVAPTAPLLFENVEGTLDGANNNGSPKVSGSNSRLSSFRRILSRDRSMRRIQPSSHDDVEHDLESQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02589 229 Pfam Ring finger domain 97 140 IPR001841 -
Gma13g02589 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 146 IPR013083 -
Gma13g02589 229 SMART ring_2 98 139 IPR001841 -
Gma13g02589 229 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Gma13g02589 229 PANTHER RING FINGER DOMAIN-CONTAINING 1 229 - -
Gma13g02589 229 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 229 - -
Gma13g02589 229 MobiDBLite consensus disorder prediction 209 229 - -
Gma13g02589 229 CDD RING-H2_PA-TM-RING 97 140 - -
Gma13g02589 229 SUPERFAMILY RING/U-box 92 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02589 Gma-Chr13 40749147 40750387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02589 6 227 C3H Transcription Factor Family AT2G42360 46.058 3.85e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02589 K19038 - gmx:100796057 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02589 13 40749147 40750387 Gma13g02589 13 40749147 40750387 ECH
Gma13g02589 13 40749147 40750387 Gma12g01966 12 40258221 40259088 GST