Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02579 ATGGAAATGGAAGCCTTTGCCCCACATAGGATTAGTGACGGTTTTCCAGTTTGTTGTGGTGTAATTGGAAGTGGGTATGGTTCATCTTCGTCTCTAGTGTTGGATAAGGAGAAGGGAGAGCTTGTAGAGGCCCCTGTCAAATTGGAACGCAAGGGTGTGTCTCCTGAGAGAAGCATTGAAGCCTTGAAGAACCATAGTGAGGCAGAGAGGAGAAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCTCTGTCATTCCTGGTGCTAAGAAGTTGGACAAAGCAACCTTGCTGGGTGAGGTTATTAGACATTTGAAAGAGCTGAAAACGAATGCGACACAAGCTAGTGAAGGCCTAATGATACCGAAGGACAGTGATGAAATAAGAGTTGAAGAACAGGAGGGTGGATTGAATGGTTTCCCTTACTCAATCAAGGCATCACTATGTTGTGAATACAAACCCGGGTTATTGACCGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCTGAGATTGCAACCTTGGGAGGAAGGATGAATAGTGTGTTTGTGATAATTAGCTGCAAAGAACAAAATATTGAAGATCCCGAGTACCGCCAGTTTCTGGCAGGGTCTGTTCATCAAGCTCTAAGATCAGTGTTAGATAGATTTTCTGTTTCACAGGACATGTTAGAAAGCAGGAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTATAGGAGATTTCTTTTGA 750 0.4253 MEMEAFAPHRISDGFPVCCGVIGSGYGSSSSLVLDKEKGELVEAPVKLERKGVSPERSIEALKNHSEAERRRRARINAHLDTLRSVIPGAKKLDKATLLGEVIRHLKELKTNATQASEGLMIPKDSDEIRVEEQEGGLNGFPYSIKASLCCEYKPGLLTDIRQALDALHLMIIRAEIATLGGRMNSVFVIISCKEQNIEDPEYRQFLAGSVHQALRSVLDRFSVSQDMLESRKRRRISIFSSSSIGDFF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02579 249 CDD ACT_UUR-ACR-like 148 219 - -
Gma13g02579 249 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Gma13g02579 249 PANTHER TRANSCRIPTION FACTOR BHLH30 1 249 IPR045847 GO:0003700|GO:0006355
Gma13g02579 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 115 IPR036638 GO:0046983
Gma13g02579 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Gma13g02579 249 Gene3D - 56 118 IPR036638 GO:0046983
Gma13g02579 249 SMART finulus 66 115 IPR011598 GO:0046983
Gma13g02579 249 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02579 Gma-Chr13 40654220 40656903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02579 47 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.409 1.81e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g02579 HLH 4.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02579 - - gmx:100792902 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02579 13 40654220 40656903 Gma13g02579 13 40654220 40656903 ECH