Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02553 ATGGATTCAACAAGCAACGAGCGAGCTAGGGACCTTTTTATGGGGTTCTCAATATTTACCGAGCCAATGAAAACCGAAATCATCGAGCATGCACGTTCAGCCATGGAAGAGTTGTTAAAGATAGGCACTGCAGGGCATCTTTTATGGAAGCCGCAACCAAAGGATAGATATGACATTTTAAATCAAATTGAATATATGAGACAATTTGGTCAGGTTGATTCAACGCTAAATTCACCAACCTTTGCCACATATCAAACCGAGCAGCCAGCATCAATGGAAACTCCTACAGTAGCCCTACAAACTGAAGCTTCACGAGATATGGCATTTATTAACATGTCCCCAATCAGCATTGTTGAATTACTAATGGATGTGAATGAATGGTCGAGTGCATTTTACAACATTGTCTCAAAAGCAACAATTGTAGGAACTTTGTTAGGAGCCCAAGGAAGCTATAATGACAAATTGCACGTGATGAGCGCAGAACTTCATTTACCTTCTACTACTGTACCGATTAGGGAGTATTATTTTGGAAGGTACAGCAAGAAGTTCTCTCATAACATATGGGGAATTGTGGATATATCATTGGAGAAGTTTATTCCTTCCCCAACGAGTAATTTATTGAAAAGACCATCTGGCTGTTTAATTAGTGGAATGGCTAACGGACATTCTAAGGTTGTTGCATGGGTTGAGCATGTAGAAGCAGATCATAGTCATTTGGACAATTATTTCAAGCCTCTAGTCGCCTCTACTCTAGCTTTTGGTGCAAGCCGTTGGCTTAATTCCTTAAACAGATATGGTGAATGGTTACAAACTCTAAGAGCAACAACATTTGTTGCAGATGAAGGAGTTCTTATACCCCAAACTGGGAGGACAAGTTTCTTGAAGCTGGGAGATAGAATGATGAAAACCTTTTGTGCAAATGTGAGTGCTACCGCAGACAATCCATGGATGAAAATAACTAGTTTTCATGGTGATTCAGATGTGAAAGTCATGATCAAGAATAATGTAGAAGATACTGCAATGCCTCCTGGTACATCTGCGGTTTTCACTACTTCTGTTTGGCTGGAAGTCTCCCCAAATCGATTATTCAACTTCCTACGTCATGAGAATTCCAGAACCAAGTGGGATATGCTTTCACATAGACTTGTTATTCGAAAAGTCGCGTCCATACCTAAGGGAGAAAATCCAGGGAATTGTGTTTCCTTACTGCGTGCAAATACCTCACAGGGCAAGCTTCAGATCTTTTATCTGCAAGAGAGTTACACAGACTCAACAGGTTCCTACGTGGTATATGCTCCACTAGACGAGTCAGCTATCACAGCTATTGTAAAGGGAACAAACCCTGATAGAGTGATGATTCTACCATCAGGGTTTAGTATACTTCCCGGAAGGTTGCAAGGAGATGAAGATAGAGGCACCACTGGAAGCCTTCTAACTGTTGCATTCCATGTATTTGAAAGTGTCACAAATAAGTCACATATCCTTCCTGAGTATATCCACACCATGCGCAAAGTCATTACAGATACCGTTACCTCTATAAAGGACATAGTGCAGTATCATAATCGACCCAACAATTGGATGGAGGATTCAGATTTTCTAGTCAGATTCTAA 1611 0.4072 MDSTSNERARDLFMGFSIFTEPMKTEIIEHARSAMEELLKIGTAGHLLWKPQPKDRYDILNQIEYMRQFGQVDSTLNSPTFATYQTEQPASMETPTVALQTEASRDMAFINMSPISIVELLMDVNEWSSAFYNIVSKATIVGTLLGAQGSYNDKLHVMSAELHLPSTTVPIREYYFGRYSKKFSHNIWGIVDISLEKFIPSPTSNLLKRPSGCLISGMANGHSKVVAWVEHVEADHSHLDNYFKPLVASTLAFGASRWLNSLNRYGEWLQTLRATTFVADEGVLIPQTGRTSFLKLGDRMMKTFCANVSATADNPWMKITSFHGDSDVKVMIKNNVEDTAMPPGTSAVFTTSVWLEVSPNRLFNFLRHENSRTKWDMLSHRLVIRKVASIPKGENPGNCVSLLRANTSQGKLQIFYLQESYTDSTGSYVVYAPLDESAITAIVKGTNPDRVMILPSGFSILPGRLQGDEDRGTTGSLLTVAFHVFESVTNKSHILPEYIHTMRKVITDTVTSIKDIVQYHNRPNNWMEDSDFLVRF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02553 536 CDD START_ArGLABRA2_like 24 264 - -
Gma13g02553 536 SUPERFAMILY Bet v1-like 289 491 - -
Gma13g02553 536 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN ROC2 7 521 - -
Gma13g02553 536 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 7 521 IPR042160 -
Gma13g02553 536 Pfam START domain 35 267 IPR002913 GO:0008289
Gma13g02553 536 ProSiteProfiles START domain profile. 20 271 IPR002913 GO:0008289
Gma13g02553 536 SUPERFAMILY Bet v1-like 23 267 - -
Gma13g02553 536 SMART START_1 60 268 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02553 Gma-Chr13 40418599 40422716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02553 11 517 Homeobox Transcription Factor Family AT4G04890 40.153 2.49e-121 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02553 K09338 - gmx:102662817 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02006 12 40648552 40660751 Gma13g02553 13 40418599 40422716 ECH
Gma13g02553 13 40418599 40422716 Gma13g02553 13 40418599 40422716 ECH