Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02533 ATGGTTTCCCCGGAAAACAGCAATTGGCTGTTCGATTACCCGTTGATCGACGACGACGTTATTCCCGTCGGCGACTCCTCCTTCGCCGTCTCCGCTTCCACCTTCTCCTGGCCCCCACCTCCCGCCAATGTCAGTGTCGAAATTGATGCTTCGCTTGGGGATTCTGATGGCCTAAAAAATCCTGCTTTGAAGAAAAGGACTAAATCTGATTCAAGTACTGCTTCTAGCTCCAAAGCGTGTCGGGAGAAGTTGAGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATCTTGGAGCCCGGAAGGCCTCCCAAAACAGACAAGGCTTCCATTCTGATTGATGCTGCCCGAATGGTGACACAGCTGCGGGATGAAGCCCTGAAGTTGAAAGACTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGGTGCAGGTAAAATCAATGAATGCTCAACCTGCTTTCTTGCCACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCTGGCAACAAGTTGGTGCCTTTCATCAGCTATCCGGGAGTTGCCATGTGGCAATTTATGCCTCCGGCCGCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCGGTTGCCTAA 705 0.505 MVSPENSNWLFDYPLIDDDVIPVGDSSFAVSASTFSWPPPPANVSVEIDASLGDSDGLKNPALKKRTKSDSSTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKASILIDAARMVTQLRDEALKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEVQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02533 234 Gene3D - 76 153 IPR036638 GO:0046983
Gma13g02533 234 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 234 - -
Gma13g02533 234 Pfam Helix-loop-helix DNA-binding domain 77 124 IPR011598 GO:0046983
Gma13g02533 234 Coils Coil 121 176 - -
Gma13g02533 234 MobiDBLite consensus disorder prediction 54 81 - -
Gma13g02533 234 PANTHER BHLH TRANSCRIPTION FACTOR 1 234 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gma13g02533 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 148 IPR036638 GO:0046983
Gma13g02533 234 CDD bHLH_AtILR3_like 80 153 - -
Gma13g02533 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
Gma13g02533 234 CDD bZIP 139 171 - -
Gma13g02533 234 SMART finulus 79 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02533 Gma-Chr13 40207583 40210186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02533 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.880 1.46e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g02533 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02533 - - gmx:100801742 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02533 13 40207583 40210186 Gma13g02533 13 40207583 40210186 ECH
Gma13g02533 13 40207583 40210186 Gma12g02024 12 40896762 40898656 GST
Gma13g02533 13 40207583 40210186 Gma12g01230 12 16211401 16214776 PCT
Gma13g02533 13 40207583 40210186 Gma06g02458 06 46923207 46927656 PCT
Gma12g01230 12 16211401 16214776 Gma13g02533 13 40207583 40210186 PCT
Gma06g02458 06 46923207 46927656 Gma13g02533 13 40207583 40210186 PCT