Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02520 ATGCCATCATCTTTTAGTATGGATTCGCAACAGCTCTTCAGTTTCGAATTACCTTACATGTCATCTTTACCCACCGTTCCATCGCTTCTTGGATCCTTGAAATATGACACAGGAAACTCACCTAATTCACCCTTCTCCACTTATTTTGATTCTGACACTCTTTCGGCATTGAGTGACGGCCAGGAGCAATACAGCCCTGGAGAAATCCTCTCTGGTGTCAGCCCCTCTTGTAACTCTTCTCTGGAAACCAACCATTATATGTATAGATCAGTCTCCACTTTGGACAGTTTCCCATTATATTCTGATAGGAACTCTCTTCTACAGACTATGAGTTCTAATCAGAAAATCCAACATGCTTTGCTGGAGCTAGAAACTGCTCTGATGGCACCTGATGACGATCAAGTTAACACACCGAATACATTGGCCGAGAGCAGCAGGCCAATGGCATCAGGCCAGAGATCCAGGTCCTGGAGCAATGAGAACCATGTGTCACAATATACTCAAACTCAGCCATCATATGCAACTGCCAATATGCAGTCAAGTGAAGTTGTGCACGTAGAGAAACGGCAAAAGTTGATGGAAGAAGCAACGCTACAAGATTTCCCACCAAACAATTTGAAGCAGTTGCTGATTGCATGTGCCAAAGCCCTGTCTGAAAACAACACGAAAGATTTTGATCAATTGGTAGGAAAGGCTAAAGATGCTGTGTCCATCAATGGGGAGCCAATCCAGCGGCTTGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGATGCAAGCATCGGGGAATAGCATCTATCATGCCCTCAGGTGCAGAGAGCCTGAAGGTGAAGAGTTACTCACTTACATGCAACTGTTGTTCGAAATCTGCCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCGCAAGCATGCAGAAACGAGGATCACATACACATCATAGACTTCCAAATTGCTCAGGGAACTCAATGGATGACTCTTCTTCAAGCCCTTGCTGCAAGACCTGGTGGTGCTCCCCATGTTCGGATCACAGGGATTGATGATCCTGTTTCCAAATATGCCCGTGGCGACGGACTAGAAGTTGTTGGGAAAAGGTTGGCCTTGATGTCTGAGAAATTTGGCATCCCAGTTGAGTTTCATGGAGTTCCTGTTTTTGCTCCAAATGTGACAAGGGAAATGCTTGATATCAGGCCAGGAGAGGCCTTGGCTGTGAATTTTCCCTTGCAACTCCATCACACAGCTGATGAGAGTGTTCATGTGAGCAACCCAAGGGATGGACTTCTGAGATTGGTAAGGTCACTTTCTCCCAAGGTGACCACACTGGTGGAGCAGGAATCAAACACAAACACAACCCCTTTCTTCAACAGGTTCATTGAAACCTTGGATTACTACTTGGCAATCTTTGAGTCCATTGATGTCACCCTCCCAAGAGATAGCAAGGAGAGGATTAATGTGGAGCAACATTGTCTGGCCAGGGATATTGTGAATATCATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTGTTCGGCAAGTGGAAGTCGAGGTTAACGATGGCCGGCTTCCGTCAGTGTCCTTTGAGTTCTTATGTGAATTCTGTCATAAGAAGCCTTTTGATGTGCTATTCAGAACACTATACACTGGTGGAGAAGGATGGAGCCATGTTGTTGGGGTGGAAGGACAGAAATTTGATATCAGCTTCAGCATGGCATTGCTAA 1734 0.4562 MPSSFSMDSQQLFSFELPYMSSLPTVPSLLGSLKYDTGNSPNSPFSTYFDSDTLSALSDGQEQYSPGEILSGVSPSCNSSLETNHYMYRSVSTLDSFPLYSDRNSLLQTMSSNQKIQHALLELETALMAPDDDQVNTPNTLAESSRPMASGQRSRSWSNENHVSQYTQTQPSYATANMQSSEVVHVEKRQKLMEEATLQDFPPNNLKQLLIACAKALSENNTKDFDQLVGKAKDAVSINGEPIQRLGAYMVEGLVARMQASGNSIYHALRCREPEGEELLTYMQLLFEICPYLKFGYMAANGAIAQACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLALMSEKFGIPVEFHGVPVFAPNVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLMCYSEHYTLVEKDGAMLLGWKDRNLISASAWHC 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02520 577 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 576 IPR005202 -
Gma13g02520 577 Pfam GRAS domain family 206 575 IPR005202 -
Gma13g02520 577 MobiDBLite consensus disorder prediction 132 166 - -
Gma13g02520 577 ProSiteProfiles GRAS family profile. 197 576 IPR005202 -
Gma13g02520 577 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02520 Gma-Chr13 40115548 40117281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02520 205 575 GRAS Transcription Factor Family AT1G50600 62.803 4.86e-174 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma13g02520 GRAS 2.8e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02520 - - gmx:100799073 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02520 13 40115548 40117281 Gma13g02520 13 40115548 40117281 ECH
Gma13g02520 13 40115548 40117281 Gma12g02038 12 40991046 40992761 GST
Gma13g02520 13 40115548 40117281 Gma12g01245 12 16622337 16626006 PCT
Gma13g02520 13 40115548 40117281 Gma06g02450 06 46785426 46788692 PCT
Gma12g01245 12 16622337 16626006 Gma13g02520 13 40115548 40117281 PCT
Gma06g02450 06 46785426 46788692 Gma13g02520 13 40115548 40117281 PCT