Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02481 ATGGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGACTTACAAATTATGCAGCAGCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgctactggagaggattattcagtggaacctgccgagagcaggaggccattccgtgcactccttgatgttggtcttgttaggactacaacaggaaatcgcgtctttggtGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGCGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGGCATGA 630 0.3603 MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDIVAQIISASIAGDLVLATAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHVAAYMKA 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02481 209 Gene3D - 1 209 - -
Gma13g02481 209 SUPERFAMILY Translational machinery components 11 208 - -
Gma13g02481 209 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 208 - -
Gma13g02481 209 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02481 209 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02481 209 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02481 209 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02481 209 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02481 209 CDD Ribosomal_L18_L5e 41 170 - -
Gma13g02481 209 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02481 209 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 208 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02481 Gma-Chr13 39669724 39671493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02481 1 208 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 86.058 3.98e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02481 K02932 - gmx:100786189 408.683