Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02480 ATGGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGACTTACAAATTATGCAGCAGCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgctactggagaggattattcagtggaacctgccgagagcaggaggccattccgtgcactccttgatgttggtcttgttaggactacaacaggaaatcgcgtctttggtGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGCGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACATCAAACGTGGGATAGAGGCTGATGGTATTGAGGCACTTTACAAGAAGGATCAGCACGGATGGCAGCATGAACCTTCTTGTAAAGTGCCTCAATACCATCAGCCTCTATCCCACGTTTGA 777 0.3784 MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDIVAQIISASIAGDLVLATAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKDQHGWQHEPSCKVPQYHQPLSHV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02480 258 SUPERFAMILY Translational machinery components 11 214 - -
Gma13g02480 258 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02480 258 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02480 258 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02480 258 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02480 258 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02480 258 Hamap 50S ribosomal protein L18 [rplR]. 14 240 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02480 258 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 251 - -
Gma13g02480 258 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma13g02480 258 CDD Ribosomal_L18_L5e 41 170 - -
Gma13g02480 258 Gene3D - 1 257 - -
Gma13g02480 258 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 251 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02480 Gma-Chr13 39664610 39669573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02480 1 257 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 76.806 4.93e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02480 K02932 - gmx:100786189 459.914