Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02479 ATGGAAAGCACCGACTCATCAAGCGGTTCACAACAACCGAACCTGCCACCTGGGTTTCGGTTCCACCCCACTGATGAAGAGCTTGTAGTTCACTACCTCAAGAAAAAAGCAGCTTCTGCTCCTCTTCCGGTAGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGCTAAGGCCGCGTTTGGGGAGCAGGAGTGGTATTTCTTTACTCCGAGGGACAGGAAGTATCCGAACGGCGCGAGGCCAAACAGGGCGGCGACATCTGGGTATTGGAAGGCTACTGGGACTGATAAGCCTGTGTTGACCTCTGGTGGGACCCAAAAGGTTGGGGTGAAGAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGGATCAAAACCAATTGGATCATGCATGAATATAGGCTAACTGATAACAAGCCTAACAATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGACAGGGAAGATTCAATGGATGACATGATTGGAGGGATTCCTCCATCCATCAACGTGGGCCACATGAGTGCGAGGTTTCATCATCTTTCAAAGATGACGACAGCCTACAACAACGGTGCATTGTTGGAAAATGATCACCACAACTTGTTGGAAGGGATGATGATAGGTAACAGCAACGGAGGGATGAACACAACTACTACTACTACACCTGGTCCCATGTCATCTCACTTAGGGGGATCCAAGGAAGAGCTTTCTTTTGTTCCAACCATGACTCACTCTTCAAACACTTCTAAGAGAACACTTTCATCACTGTATTGGAACGATGAGGATGTGGCGGGTACCTCATCTTCGAACAAAAGGTTCAATTTGGAATTAAGTGGGGACAATAATAACCATGGAAGTGTTGTGAGGGATGATCAAGAGAATGGCACTGCTTCCTCTATTGCCACTCTGCTTAATCAACTCCCTCAAACCCCTTCATTGCACCAACAATCAATATTGGGGTCAATAGGTGATGGACTTCTTAGAACAACATACCAAATACCAGGAATGAATTGGTATGCTTAG 1128 0.4752 MESTDSSSGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKAAFGEQEWYFFTPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLTDNKPNNRPPPGCDLGNKKNTLRLDDWVLCRIYKKSNTHRSPMEHDREDSMDDMIGGIPPSINVGHMSARFHHLSKMTTAYNNGALLENDHHNLLEGMMIGNSNGGMNTTTTTTPGPMSSHLGGSKEELSFVPTMTHSSNTSKRTLSSLYWNDEDVAGTSSSNKRFNLELSGDNNNHGSVVRDDQENGTASSIATLLNQLPQTPSLHQQSILGSIGDGLLRTTYQIPGMNWYA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02479 375 MobiDBLite consensus disorder prediction 1 20 - -
Gma13g02479 375 Gene3D NAC domain 24 182 IPR036093 GO:0003677|GO:0006355
Gma13g02479 375 SUPERFAMILY NAC domain 9 177 IPR036093 GO:0003677|GO:0006355
Gma13g02479 375 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Gma13g02479 375 ProSiteProfiles NAC domain profile. 15 177 IPR003441 GO:0003677|GO:0006355
Gma13g02479 375 PANTHER NAC TRANSCRIPTION FACTOR 56 1 351 - -
Gma13g02479 375 MobiDBLite consensus disorder prediction 1 17 - -
Gma13g02479 375 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02479 Gma-Chr13 39648438 39650565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02479 1 375 NAC Transcription Factor Family AT3G15510 53.149 3.33e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma13g02479 NAM 9.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02479 - - gmx:100170710 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02479 13 39648438 39650565 Gma13g02479 13 39648438 39650565 ECH
Gma13g02479 13 39648438 39650565 Gma12g02082 12 41522533 41524105 GST