Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02478 ATGGGAGTTCCAGAGAAAGACCCTCTTTCCCAATTGAGTTTGCCTCCTGGTTTTCGGTTTTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTGTGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACAGGAAATACCCGAACGGGTCTCGACCCAACAGAGTAGCTGGGTCGGGTTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAAGGTAGAAAAGTTGGCATAAAAAAAGCCCTCGTTTTCTACGTTGGCAAAGCCCCCAAGGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAGAACACTGGCACCAAGCTTGATGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCGAGTGCACAGAAGACGGCGCAAAACGGCGTGGTTCCGAGCAACGAGCACACTCAATACAGCAACGGTTCCTCTTCTTCTTCTTCGTCCCAGCTGGAGGACGTTCTGGAATCTCTGCCATCGATTGATGAAAGGTGTTTCGCGATGCCACGCGTCAACACGCTGCAACAACAACAGCACCACGAGGAGAAGGTCAATGTTCAGAACTTGGGTGCAGGGGGTTTAATGGATTGGACCAACCCTTCGGTTCTGAATTCGGTCGCCGATTTCGCTTCGGGGAATAATCAAGTGGTACAGGACCAGACTCAGGGGATGGTGAACTACAACTGCAATGACCTTTATGTCCCTACGTTATGCCACTTGGACTCATCGGTTCCGTTAAAGATGGAGGAAGAGGTGCAAAGCGGCGTGAGAAACCAACGGGTCGGGAATAATAATTCGTGGTTTCTTCAGAATGATTTCACACAGGGGTTTCAGAATTCGGTTGACACGTGTGGGTTTAAATACCCGGTTCAGCCGGTCGGGTTCGGGTTCAGAAATTGA 1032 0.499 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKNTGTKLDDWVLCRIYKKNSSAQKTAQNGVVPSNEHTQYSNGSSSSSSSQLEDVLESLPSIDERCFAMPRVNTLQQQQHHEEKVNVQNLGAGGLMDWTNPSVLNSVADFASGNNQVVQDQTQGMVNYNCNDLYVPTLCHLDSSVPLKMEEEVQSGVRNQRVGNNNSWFLQNDFTQGFQNSVDTCGFKYPVQPVGFGFRN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02478 343 MobiDBLite consensus disorder prediction 167 197 - -
Gma13g02478 343 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 315 - -
Gma13g02478 343 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Gma13g02478 343 PANTHER NAC TRANSCRIPTION FACTOR 56 1 315 - -
Gma13g02478 343 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Gma13g02478 343 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Gma13g02478 343 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02478 Gma-Chr13 39625433 39627213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02478 1 274 NAC Transcription Factor Family AT3G15500 63.763 7.45e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma13g02478 NAM 6.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02478 - - gmx:100170718 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02478 13 39625433 39627213 Gma13g02478 13 39625433 39627213 ECH
Gma13g02478 13 39625433 39627213 Gma12g02083 12 41545288 41547485 GST