Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02457 ATGGCCGAGTTCACAGAATTGTTTCCATTGGGCGAACAATTTGATGGTTTGATGCACGTGTATGTGTATGTCATCACATTTGATCTTCCAACTCTATTCATTGTTCTATTCATACTCACAGCGTTGTTCTTCATCTTGTATCGAATTCTCAACGGTTTGTTCTTCTGGTTATTGGAAATGAGGCCAATTGAACATGATATTGAAGAGGGTAATTCTAATACTCATTTAGCCAATTATGGGGAAACTGAGCCATCTCACTATGTTACAATATTTCATGCCCTTGTGCATCCTTGGGCATTGGTGACTGCATTTGAAGGAGCTTTTAATGAGAAAAGAGGACAAAGACTTAGAGCTTCCAAGAAATTGCCCCCTTTGGTGAATTATGGAAAGCATGGTGTCACAAGAAGTTGTGGTGAGGAATGTGCCATTTGCATGGAAGAATTCAAAGTTAGTCAATTGTGTCAAGTTTTTCCCGAGTGCAAGCACATTTTTCATTCTGATTGCATAGACCACTGGTTGCAGAAGAAACTAACTTGCCCAATATGTCGTAGTTGTATATAG 561 0.3922 MAEFTELFPLGEQFDGLMHVYVYVITFDLPTLFIVLFILTALFFILYRILNGLFFWLLEMRPIEHDIEEGNSNTHLANYGETEPSHYVTIFHALVHPWALVTAFEGAFNEKRGQRLRASKKLPPLVNYGKHGVTRSCGEECAICMEEFKVSQLCQVFPECKHIFHSDCIDHWLQKKLTCPICRSCI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02457 186 CDD RING-H2_PA-TM-RING 140 183 - -
Gma13g02457 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 186 IPR013083 -
Gma13g02457 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 186 - -
Gma13g02457 186 PANTHER - 18 186 - -
Gma13g02457 186 Pfam Ring finger domain 140 183 IPR001841 -
Gma13g02457 186 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Gma13g02457 186 SMART ring_2 141 182 IPR001841 -
Gma13g02457 186 SUPERFAMILY RING/U-box 136 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02457 Gma-Chr13 39384941 39385501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02457 16 184 C3H Transcription Factor Family AT1G53010 28.814 5.54e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02457 - - gmx:102664186 390.578