Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02430 ATGGCTCCAAGAGACAGCCGAGCCACCGCGCTCATTGGGCCCGGCCCAAGCCTATCACCGGCCCACAAAGAGATCCGCTACAGAGGCGTCAGGAAACGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGATCCCGGCAAGAAAACCCGCGTCTGGCTCGGCACTTTCGACACCGCCGAGGAAGCCGCGCGCGCCTACGACACCGCCGCGCGTGAGTTTCGTGGCGCCAAGGCCAAGACCAATTTCCCGACACCCTCGGAACTCATCCTTAACAACAACAACATAAACGCTCGTAGTCCCAGCCAGACCAGCACCCTCGACTCATCCTCTCCCCCGCCACCGCCACCGCTAGACCTTACCCTCACCCCTCTCTCCTCCGCTGTCTTCCCGGTGGCGCGTCCTGTTCTATTCTTCGACGCATTCGCGCGTGCGGACACCATGGTCGCCGTCTCGCGCCGCGAGACCTGCGGCTTCGAACGCCCCGCCGCCGATTTCCGCCGCGGCGACTCCGACTCTGATTATAACCGCCGCATACTCCTGGATCTTGACCTGAACGTACCTCCTCTCCCGGAGGTTGCCTGA 582 0.6426 MAPRDSRATALIGPGPSLSPAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPSELILNNNNINARSPSQTSTLDSSSPPPPPPLDLTLTPLSSAVFPVARPVLFFDAFARADTMVAVSRRETCGFERPAADFRRGDSDSDYNRRILLDLDLNVPPLPEVA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02430 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 122 - -
Gma13g02430 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 131 183 - -
Gma13g02430 193 CDD AP2 26 83 IPR001471 GO:0003700|GO:0006355
Gma13g02430 193 MobiDBLite consensus disorder prediction 1 25 - -
Gma13g02430 193 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Gma13g02430 193 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Gma13g02430 193 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gma13g02430 193 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Gma13g02430 193 MobiDBLite consensus disorder prediction 84 106 - -
Gma13g02430 193 PANTHER ERF FAMILY PROTEIN 131 183 - -
Gma13g02430 193 PANTHER ERF FAMILY PROTEIN 1 122 - -
Gma13g02430 193 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gma13g02430 193 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gma13g02430 193 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Gma13g02430 193 MobiDBLite consensus disorder prediction 82 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02430 Gma-Chr13 39046212 39047198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02430 23 139 AP2-EREBP Transcription Factor Family AT3G15210 66.667 3.86e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g02430 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02430 K09286 - gmx:100813652 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01049 12 11894047 11894664 Gma13g02430 13 39046212 39047198 ECH
Gma06g02603 06 49332950 49333923 Gma13g02430 13 39046212 39047198 ECH
Gma13g02430 13 39046212 39047198 Gma15g00730 15 6014684 6015615 ECH
Gma13g02430 13 39046212 39047198 Gma13g02430 13 39046212 39047198 ECH