Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02425 ATGCGATCATCGCCGTCTTCATTGGGTTCGTCGTCTCGATCAGGTTCGCGGCTTCGGAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAAGAGTACAGTCGAAACCATGGTGAGTTGAATGAGGATAATGAGGATAATGGGGATTTGAACCCTGATGCTGGGGTTCGTCGAAGCTCCCGGGTTCGCCGTGCCCCAATGCTGCTCGACGCTTCTCCAGCTCCGCCGAAGAAAAGGAGGAAAGTGGGGAAGGGTGGAATTGGTCGTATTGTGGAGGGTGCTAGGAGATTAGGGCGGGAAAATAAAGGTTCTGGTGGGGCTTGGAGTTCTAGGTTGAGATCAAGAGTTGGCAATGTAGGTGTTAGGGTGAAGGAGGAGAGGGAATCGCCTCGTGGGAAGAGGAAGCTTTTTGAGGGTGTGGTTGGAAGGAGGGGTGTTGAGGAGGTTGGTGGGAAAGAGGAGTTGGGAGGTTTGATGCCGAAAGTGGTTAAGTCGAAGAGACCGGGGAGGATTAAAGCCACAAAGCATGAGGAAGGGCATGAAGAGGATGTGTCTGATGGGAGTTTGGAGGAGAGTAAGAGTCAGGAAGTGGAGATTATGTTGAGCAGTGGTGAGGAGAGTGATTCTGATCCGGAAACCAAATTGTCTGGAGGGGATTGCatggatgattcagatggaaatgcctctcctgtgatagggaatgaggaggggaatccaatggatgattcggatggagatgtcgctcctatgatagggaatgaggagggggatcagatggatgattttgatggaaatgaccctctgatggtagggaaCAAGAAGAACTTATGCAACGATTTGCAAATAGATGAATGTGATGGCAACGCTGAATCGTCTCCAATGGAGCATGTAGTTAAAGTGGATGATCAGTTAGAGAGTGTGAAGGAAAGCAAAAATGTAGGTGATGTAGCTGAACAGGTAGATAATGAAGGATCTGTtggtaaggaggttgacgtcaatgaaaatgtcttgaaagatgcaaatgatggtaaggaggatgatgctgatgaaaatgtcttgaaaggtgcaaatgTTGGGAGGTCGGATGAGTTGAAACATGCTTCAATTGACAAGCGTGGTCACCAGCGTATCAAAGAGGGAAGGCGGTGTGGTTTGTGTGGTGGAGGGAGCGATGGTAAGCCTCCGAAAAGGTTAGCTCAGGATAATGGTGAAAGTGAGAATGAAGCTTATAGCGGGTCATCATCTTCAGAGGAGACTAATTATGATATCTGGGATGGTTTTGATGATGAACCTGGTTGGCTTGGGCGTCTCTTGGGTCCTATTAATGATCACTGTGGTATTGCTAGAATATGGGTTCATCTGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTAACTTTGGATGCTTAAAAAATGCGAGAGCTGCACTTTTCCGAGGAAGAGCATTGAAGTGCACGCGTTGTGGGAGGCGAGGGGCAACCACTGGTTGTCGCGTTGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCAAGAGCAAGTGGTTGCATCTTTGATCATCGCAAATTTCTTATAGCTTGCACAGATCATCGGCATCTCTTCCAACCACGTGGCAATAAATATTTAGCCCGGATAAAGAAGTTGAAGGCTAGGAAAATAATGTGGGAGATAAGGAAGCGATCAAATGAAGCTTGCAGAAAAGATATTGGAGATGAAGAGAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGTGAGAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCAGTGTACATTGGGGGTTCAGATTCTGCCAGTGAAAATTCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCGTTGTATGAAAGAAGTTGTTATTTTACCTCTCCTATATCCTGACCTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTTTTGCATGGGCATCCTGGAACGGGGAAAACTTTGGTGGTCCGGGCATTGATAGGTGCATGTTCCCGTGGTGATAAGCGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAGTATGTTGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGGTTGGCACCCCGCCGCACTAGGCAGCAAGATCAGACACACAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCAAGGGGTTCAGTTGTGGTAATAGGTGCAACAAACCGTCCTGAAGCTGTTGACCCAGCACTTAGGCGCCCCGGTAGATTTGATCGAGAAATTTATTTTCCATTACCAACAATTGAGGACAGAGCTTCCATTCTCTCACTTCACACCCAGAAGTGGCCAAAACCAATTACCGGGTCCTTGCTTGAGTGGATTGCAAGAAAAACACCTGGATTTGCTGGTGCTGATCTCCAGGCTCTTTGTACCCAAGCGGCGATGAATGCGTTGAAGAGGAATTTCCCTTTGCAAGAAGTCCTGTCTTTAGCTGCTGAAGAAAAACATTCTGGTTCTAAGCACATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGATTGGTTAGAGGCTTTTTTTTCTTCCCCACTACCTTGCTCCCGGAGAGATGCTGGAAATGCTGCTAATGATGCAGTATGCTCCCCTCTTCCCATCCAACTTATTCCTTGTTTATTGCAGCCATTATGCACTCTTCTTGTATCTCTTTATCTTGATGAACGATTATGGTTACCACTTTCCATACTGAAAGCTGCAACAGTGATAAAGGATGTCATGATTTCTGCTCTAGACAAAAAGCAAAAGCCTTCTGATCGCTGGTGGTTGCACATGGATGATTTTCTTCAAGAAACAAACATTGTTTATGAGTTAAAGAGAAAGCTTACTTGTTCTGGCATTTTATCTGCCAACGACGGCAATGCTGGTTCTTGTGAAACTGAGGATGATGCCAATAATAACAGCTTGAAGTTAGAATCCTCCACAAGGAACCATCCTGGCATGCGTAGTGGTTTATTTGCATTGACCAACAAATCAGGATTTCGGATATTAATATCTGGAAATTCACGATCTGGCCCGAGGCATCTTGCTTCTTGCCTTCTTCACTGCTTTATTGGTAATATTGAAATACAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGAAGTGGTGCAAGGGATTGGTCAGATACTAATGAAATGTGCTAGCAGGCAATCTTGCATAGTATTCTTGCCAAGAATTGATTTATGGGCTGTGGAAAAACATTTCCAAATTGCTGAAAGGACTGATTCGTGTTTAATGATGGGCAAGTCGTGTTTCACACGAAACCAAGTTGTTGAGAAGGAAAATGAGATTAGTACTGAGAAAAACTCAACTGAGATGATCAAAGGCCAAGCCAACACAAAGGCTTCCTATGCCTGGATGTCATTTATTGAGCAGGTGGAATCCATTGATGTATCCACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCCTATACAGAACTTCCGCACAAAGTAAGGGAATTCTTTAAGAGTTATCAATCTAAAGATGGCCGGTCAACTCCTTTGGAGCAGACAATTCCTCGATTCTCTGTGCAGATTGATGAGAATTTTGATCATGACATGGTGATCAATCTATCCGCACTAGAGCTATTGAGAAATGTAGTTGAGCAGCTGGTTCAATTGATTCATCAGAGATCTCATGTTCATATGGGTTCCCAAAAGGGCAGAAGTTATGAATCAATTGAAGTTTCTAAAGATAAGGTATGTCAAAGAAAAGAAGATGGACCAGCTAATGATAAGAAGAGTGAAATCCAACTTGAATCCTTTACAAAAGTTCCACCAACACCCAACAGCAAGTCACTGAAGGGAAAGTCGACCCTGTTGTTAGCAATATCCACATTTGGCTATCAAATTCTTTTATACCCACATTTTGCTGAACTTTGTTGGGTCACTTCAAAACTCGATGAAGGTCCTTGTGCTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCTTGTATAGTTCGTCCTAATAATTCACAAGACAAGGTGGCAGTATCTTGTAGTTCTGGTGGCACCAAAAGTAGGGAAGCATCTGGTCTAGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTATAAATCAGTTAGGGAAGTTTCCCTTGATGTAAGGAAGGTTCTCGAGATCTTAATTGAGAAAATCAATACCAAAATTCAAGTGGGGAAAGATAGATATCAATATTTTCGTATTTTGTCACAAGTGGCTTATTTAGAAGACATGGTCAACAACTGGGCTTATTCATTGCTAAGTCTGGAGCAGGATTCCCCTGAGCATAAAACAAAGGTTATACCAGAAAGTGGTGGGCCATTAAACAGTCATCTCACGCGGGAAAATCACCAAACTGAAGATGAGGACTGTCATTTAGTTGTTCCTGTGGATGGTAATGATTTGGAGACATTGGAGGGAAGTCACAAGGAAATTCCTTCTGAAACAACTGGATATCTTGCCTCTGATGACAACAATGATAATGTAGAGATTATTGATTGTGATGATGGAAATGCTAGTTCTGAAGGATCTCTACAGAACCATTCCTTTCCAGATAATAAGAATATCAACAACACTACTGCTGCAAGCCAACCACTTTATCCATCCACAAGTCTGGAGAATGGGACATTATTTGGACAATCTGAACCTGTAACTGCTGGAAATAATGAAGAGATGGATGGAGAACTAGAGATTTCAGAAGACTTGAAGAAATCCACGTGCACTCACCCTGTGGTCCCTTTTCAAAATGGACTTCACACTGCTTGTGATCCAGAGACACAGAATGTCGAGATTGGTAACTTAATTACCATCTCTGATCAGCCTTTTAGCTTGTCCGCGGTAGAGACTGCTACTAAATCAAGTGATGGTAAATCTGATAAACAGGAGAATGCTACAGATAACAATGTCTCTTCAAGTAATGGCAGTGGCCCTGCTGAATCTGGGGTTATTTGCTTGTATCAATGTTGCCCTGCATGCCTCCACAGTCTCCATCACTTGACAAAGAAAATACTTGTTGAAAAATGGGGTTTAAACAGTGAGCAGTGGACGGCAGAAGATGTCCATGATGCTGTTGCATCATTATCTGTGGATCTTATTTCAGCAGTTAGAAAATGCTCTATGCCTCAAGATTTCATTGATTCATCAAATAAAACCTCAAGAAATGAAAAGCATGGAACATCTCTCGACTGTTTGAAGCTGAGAACGTGTAATAATGGAAACCAAGGCAAGGATGTTGTGCCAGCTGAATGTTTTTCTCACGCAGCAAGCCAACATGCAACTGCAATGGAAGATATGGCACTGAATGAAGAATCGACGAAGCTTGATCTTAAATTTGTTTTCAGAGATGGTGTACTAGTTCATATGGACCCAGATAAGGATGTCAAAGTTCACTGTAAATTTGAGAATTTGTGCCTTTGTTCTTTAAGAGAGTTGATAGTAATGAAAAAGCGCCCTTTTGATTAG 5610 0.4111 MRSSPSSLGSSSRSGSRLRKKHKRLDAICEEEYSRNHGELNEDNEDNGDLNPDAGVRRSSRVRRAPMLLDASPAPPKKRRKVGKGGIGRIVEGARRLGRENKGSGGAWSSRLRSRVGNVGVRVKEERESPRGKRKLFEGVVGRRGVEEVGGKEELGGLMPKVVKSKRPGRIKATKHEEGHEEDVSDGSLEESKSQEVEIMLSSGEESDSDPETKLSGGDCMDDSDGNASPVIGNEEGNPMDDSDGDVAPMIGNEEGDQMDDFDGNDPLMVGNKKNLCNDLQIDECDGNAESSPMEHVVKVDDQLESVKESKNVGDVAEQVDNEGSVGKEVDVNENVLKDANDGKEDDADENVLKGANVGRSDELKHASIDKRGHQRIKEGRRCGLCGGGSDGKPPKRLAQDNGESENEAYSGSSSSEETNYDIWDGFDDEPGWLGRLLGPINDHCGIARIWVHLHCAVWSPEVYFANFGCLKNARAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPRGNKYLARIKKLKARKIMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSASENSFQGWESVAGLKDVIRCMKEVVILPLLYPDLFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACSRGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPRRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPTIEDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAMNALKRNFPLQEVLSLAAEEKHSGSKHIPLPSFAVEERDWLEAFFSSPLPCSRRDAGNAANDAVCSPLPIQLIPCLLQPLCTLLVSLYLDERLWLPLSILKAATVIKDVMISALDKKQKPSDRWWLHMDDFLQETNIVYELKRKLTCSGILSANDGNAGSCETEDDANNNSLKLESSTRNHPGMRSGLFALTNKSGFRILISGNSRSGPRHLASCLLHCFIGNIEIQKIDMATILQEGHGEVVQGIGQILMKCASRQSCIVFLPRIDLWAVEKHFQIAERTDSCLMMGKSCFTRNQVVEKENEISTEKNSTEMIKGQANTKASYAWMSFIEQVESIDVSTSLMILATSEVPYTELPHKVREFFKSYQSKDGRSTPLEQTIPRFSVQIDENFDHDMVINLSALELLRNVVEQLVQLIHQRSHVHMGSQKGRSYESIEVSKDKVCQRKEDGPANDKKSEIQLESFTKVPPTPNSKSLKGKSTLLLAISTFGYQILLYPHFAELCWVTSKLDEGPCADVSGPWRGWPFNSCIVRPNNSQDKVAVSCSSGGTKSREASGLVRGLIAVGLSAYRGVYKSVREVSLDVRKVLEILIEKINTKIQVGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEQDSPEHKTKVIPESGGPLNSHLTRENHQTEDEDCHLVVPVDGNDLETLEGSHKEIPSETTGYLASDDNNDNVEIIDCDDGNASSEGSLQNHSFPDNKNINNTTAASQPLYPSTSLENGTLFGQSEPVTAGNNEEMDGELEISEDLKKSTCTHPVVPFQNGLHTACDPETQNVEIGNLITISDQPFSLSAVETATKSSDGKSDKQENATDNNVSSSNGSGPAESGVICLYQCCPACLHSLHHLTKKILVEKWGLNSEQWTAEDVHDAVASLSVDLISAVRKCSMPQDFIDSSNKTSRNEKHGTSLDCLKLRTCNNGNQGKDVVPAECFSHAASQHATAMEDMALNEESTKLDLKFVFRDGVLVHMDPDKDVKVHCKFENLCLCSLRELIVMKKRPFD 1869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02425 1869 ProSitePatterns AAA-protein family signature. 763 781 IPR003960 GO:0005524|GO:0016887
Gma13g02425 1869 ProSiteProfiles Extended PHD (ePHD) domain profile. 420 532 IPR034732 -
Gma13g02425 1869 MobiDBLite consensus disorder prediction 1 111 - -
Gma13g02425 1869 Pfam ATPase family associated with various cellular activities (AAA) 658 793 IPR003959 GO:0005524|GO:0016887
Gma13g02425 1869 Pfam PHD-like zinc-binding domain 453 532 - -
Gma13g02425 1869 Gene3D - 619 793 IPR027417 -
Gma13g02425 1869 Gene3D - 794 859 - -
Gma13g02425 1869 PANTHER AAA DOMAIN-CONTAINING 53 1865 IPR045199 -
Gma13g02425 1869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 851 IPR027417 -
Gma13g02425 1869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 534 IPR013083 -
Gma13g02425 1869 MobiDBLite consensus disorder prediction 159 244 - -
Gma13g02425 1869 MobiDBLite consensus disorder prediction 1662 1690 - -
Gma13g02425 1869 SMART AAA_5 654 795 IPR003593 -
Gma13g02425 1869 MobiDBLite consensus disorder prediction 384 417 - -
Gma13g02425 1869 MobiDBLite consensus disorder prediction 23 64 - -
Gma13g02425 1869 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 53 1865 - -
Gma13g02425 1869 MobiDBLite consensus disorder prediction 171 193 - -
Gma13g02425 1869 Pfam AAA+ lid domain 819 851 IPR041569 -
Gma13g02425 1869 CDD AAA 652 793 - -
Gma13g02425 1869 MobiDBLite consensus disorder prediction 308 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02425 Gma-Chr13 38998719 39006095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02425 620 855 Calmodulin-binding Proteins AT3G56690 40.756 1.64e-44 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02425 - - gmx:100803849 3623.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02425 13 38998719 39006095 Gma13g02425 13 38998719 39006095 ECH