Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02420 ATGAAGAAACCGAAGCCAACTCTGTTGAGCCCCAATTGGGTTCAACTTCAAGAAAAGCTGAAGCCGAATGGCTCCAAGGCTTCAAGGACCTTCAAAAATTCTGATGAAGACACCCCAGAATCAATATTGGGGAAACGTAAAGAGAGACCAGATGATGAACCCAACGATTGTCAGATTAATCCTCTTGCTCCTATAAATGACGATTCAAGTTTGACAGATGCAGTGGCCATGGATTGTGAAATGGTAGGCGTAGGTCAAGGGAACAAAAGTGCTCTTGGAAGAGTAACACTGGTCAATAAGTGGGGAAATGTTATTTATGACGAGTTTGTCCGGCCAATTGAGCGAGTTGTTGACTTCCGGACTAAAATTAGCGGCATAAGACCTCGAGATCTTAGAAAAGCAAAGGATTTTTGGGCTGCTCAGAAGAAAGTGGCAGAGTTGATCAATGGAAGGATCCTTGTTGGTCATGCCTTGTCCAATGATCTTAAGGCATTATTATTAAGTCATCCCAGAAAGGATATACGGGATACCTCCGAATACCGACCATTTTTAAACCGGTCAAGTAGCAGAAGAGCACTGCGGCATCTTGCTGCCGAACATCTTGGTGTTAACATCCAAACAGGAGAGCACTGTCCAGTAGAAGATGCTCGTGCTGCCATGCTGCTTTACCAAAGAAATAGAAAAGAATGGGAGAAGAACATAAAAGATCAATTTCGGTTGAAACAGAAGCAAAGGAAATCAAAGCAAAAAAAGAAACAGAAGAATGAAGACGTTTCAAATGCCAACCATGTTGAAATTTGA 801 0.4232 MKKPKPTLLSPNWVQLQEKLKPNGSKASRTFKNSDEDTPESILGKRKERPDDEPNDCQINPLAPINDDSSLTDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTKISGIRPRDLRKAKDFWAAQKKVAELINGRILVGHALSNDLKALLLSHPRKDIRDTSEYRPFLNRSSSRRALRHLAAEHLGVNIQTGEHCPVEDARAAMLLYQRNRKEWEKNIKDQFRLKQKQRKSKQKKKQKNEDVSNANHVEI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02420 266 CDD REX4_like 75 224 IPR037431 GO:0006364|GO:0008408
Gma13g02420 266 MobiDBLite consensus disorder prediction 251 266 - -
Gma13g02420 266 SUPERFAMILY Ribonuclease H-like 74 224 IPR012337 -
Gma13g02420 266 MobiDBLite consensus disorder prediction 236 266 - -
Gma13g02420 266 SMART exoiiiendus 73 232 IPR013520 -
Gma13g02420 266 MobiDBLite consensus disorder prediction 30 55 - -
Gma13g02420 266 Pfam Exonuclease 75 223 IPR013520 -
Gma13g02420 266 Gene3D - 70 252 IPR036397 GO:0003676
Gma13g02420 266 MobiDBLite consensus disorder prediction 1 68 - -
Gma13g02420 266 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 55 255 - -
Gma13g02420 266 PANTHER INTERFERON STIMULATED EXONUCLEASE GENE 20-RELATED 55 255 IPR034920 -
Gma13g02420 266 Coils Coil 213 233 - -
Gma13g02420 266 MobiDBLite consensus disorder prediction 10 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02420 Gma-Chr13 38955834 38959941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02420 74 229 C2H2 Transcription Factor Family AT5G40310 38.012 1.90e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02420 K18327 - gmx:100811497 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02420 13 38955834 38959941 Gma13g02420 13 38955834 38959941 ECH