Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02419 ATGGATGAAATGGTGGATTCAGAAATGGATCAACAGATAGAAGATTATCAACATTCTGAACCCGATATCCTTTCGAGAGGAACCACTAGCATCTCGCAGCCTAATAATAACCATGCAATGGTGGGAGAATCTGAGAACACAACTAATGCTGATTCTCACTTTCTGCCAGATGCTTATGACAATGCTAGGGTGTATGGGGTTCCACAATATAATGGTATTCAGCCTCCACATAATCTTGATACGGGTGTACCAGTTGCAACTAACTTATATTATTCTAGCATTAATCCTCCTTCCAGTACTGGTGTTTTTCATCCGCCTCAAAGTCATAGAGCCATTGAACAATTGCCGGGTTCAAACACATTTGAAGTTGCTGGAGGTTCTTCAAATAATTTTGGAAGAAGTTCTAGTTTCATGAATGATGCTAGAGGTCCACACAAAAGGAAAATTCCTAAAGGAATAAGAGGAAATTCACAAGATTTTAATGCTTCGTCGTCTAGCTCTTCAACTGCTCCCCCTAATGCAAGACATGCCAATGATGTTGCTATAATGGATAATACACAATTTCATATCCGTTCACTTGTGGAGGTAGGACCACACGGTAGTGAATGGAGCCGGCCAAATGAGTCTATTATGGTGCATGATCATAATCATTTGATCCATGGAAATTATTTAGGGCAACACTTTCCGCCAATAGCTCCTCCATGGTTGTTCCAACAGTTGAATAGTAACAATAATGATGGCCATGCTACACCCTGGAATCAATCTCTTCCAATGCCTTGTGTGCAAGCACCCGCTATAAACGGAAGTTCATTAGAGAGTGTAAGTATGGGATTGCAGAGATATCATGATCCAGTTGGAAATCGAAATGGCCTTAGGTTTCCTTATCATGTTCCTGTCAACCAACAACACCATAGTTATCATCACTCAACACTGCCCATGCAAGGAGTAAGAGATCATAGTCTCAACTTCTTCCCTACAGTAACTACAAATTCATTTAGGGTTCCAACAAATCCTTTGCGTAATGTTGCAATCCCAACACAAGCTAGTTTTGAGATGGGTCCTAGACATGTTGGCCCTGCACCATCATCTAGCCTCCGAATTTACCGACCTCATAGAGGGGTTGTGCCTGAGACAACTCTCAGACATCGAAGTCTTCCTCCCATGGGCTTCCTTCGAGTTAATGATGTTGCTTTAATTGATGAAGTGGGAAATTTGGTTGACAATcacagagatatgcgcttggacatagaggatatgtcttatgagGATCTCATTGCTTTGGGTGAGAGAATTGGCAATGTAAACACTGGTTTATCGGAGGAAACAATTACAACTCAATTGAAGACAAAAACTTATTTAACGGGTGCTACTAGTATTAATATGGAGGAGGAAGTTTGTGATGATCAGGGAACATTTTCTTGTATAATATGTCAGGATGAATTCAAGAACCAAGAGAAGATTGGAGTTCTTCAATGTGAGCATGAATATCATGCAGATTGCTTAAGAACATGGTTGGTGGTAAAAAATGTTTGCCCCATATGCAAATCTGAAGCTTTGAAATCAACTTCTGTGTCTCCTCCTACCTAA 1587 0.3945 MDEMVDSEMDQQIEDYQHSEPDILSRGTTSISQPNNNHAMVGESENTTNADSHFLPDAYDNARVYGVPQYNGIQPPHNLDTGVPVATNLYYSSINPPSSTGVFHPPQSHRAIEQLPGSNTFEVAGGSSNNFGRSSSFMNDARGPHKRKIPKGIRGNSQDFNASSSSSSTAPPNARHANDVAIMDNTQFHIRSLVEVGPHGSEWSRPNESIMVHDHNHLIHGNYLGQHFPPIAPPWLFQQLNSNNNDGHATPWNQSLPMPCVQAPAINGSSLESVSMGLQRYHDPVGNRNGLRFPYHVPVNQQHHSYHHSTLPMQGVRDHSLNFFPTVTTNSFRVPTNPLRNVAIPTQASFEMGPRHVGPAPSSSLRIYRPHRGVVPETTLRHRSLPPMGFLRVNDVALIDEVGNLVDNHRDMRLDIEDMSYEDLIALGERIGNVNTGLSEETITTQLKTKTYLTGATSINMEEEVCDDQGTFSCIICQDEFKNQEKIGVLQCEHEYHADCLRTWLVVKNVCPICKSEALKSTSVSPPT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02419 528 MobiDBLite consensus disorder prediction 132 175 - -
Gma13g02419 528 SUPERFAMILY RING/U-box 473 523 - -
Gma13g02419 528 Pfam Ring finger domain 473 515 IPR001841 -
Gma13g02419 528 MobiDBLite consensus disorder prediction 25 54 - -
Gma13g02419 528 ProSiteProfiles Zinc finger RING-type profile. 474 515 IPR001841 -
Gma13g02419 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 523 IPR045191 GO:0061630
Gma13g02419 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 519 IPR013083 -
Gma13g02419 528 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 523 - -
Gma13g02419 528 SMART ring_2 474 514 IPR001841 -
Gma13g02419 528 MobiDBLite consensus disorder prediction 156 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02419 Gma-Chr13 38950937 38953267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02419 391 521 C3H Transcription Factor Family AT2G15530 44.853 1.74e-34 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02419 13 38950937 38953267 Gma13g02419 13 38950937 38953267 ECH