Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02417 ATGGCACAATTACCTCCTAAAATACCAACCATACCCCAGAATTGGCCATCTTTCCCTCACCAAAGGGTACCCTCAATGGCCAACTTCAACCCCACAACCTCCACTACCACCGCCACTACGACTCCCCCGCCGCCTTCATGGGTCGACGAGTTTCTCGACTTCTCGTCGGCCCGGCGGGGGGCCCACCGGCGATCCGCCAGCGACTCCATCACATTCCTCGAGGCGCCTTTTCTCGAGGAATGTCGAGCCGGATTCGACCGGCTCGACGAGGACCAGCTGATTTCCATGTTCTCCGACGACATTGCTGCGGCGTCGCTGCCGCCGCCGCCGCCGCTGTCGTCGGCGTCCAACCCCTCCTCGCCGGCCTCCGACCAAAACAGCAGCGAGGAGAAGCCGATGGAAATGGCGCTGGACGTGAAGCCGAAGGCGGAAACCCTTGAAGAGGAAAGCTCGTACAAGGATGAGGAGGCGGCGCCGCAACCCTCCGCCATCGCCACCTGCACTGAAACCGTTGTTGATCCCAAGAGGGTCAAAAGAATTTTGGCTAACAGGCAATCAGCTCAGAGGTCAAGGGTAAGAAAGCTGCAATACATTTCTGAGCTTGAAAGGAGCGTAACAACTTTGCAGACGGAGGTATCAGCATTGTCACCTCGAGTTGCATTCCTGGACCATCAACGTTTGATTCTTAATGTCGACAATAGTGCCTTGAAGCAACGCATTGCTGCTTTGGCCCAAGACAAGATTTTCAAAGACGCTCACCAAGAAGCATTAAAGAAGGAAATAGAGAGACTAAGGCAAATCTATCACCAACAGAACCTACAAAAGATGAACAACAATCTTCAACAAACCACACCAACATCACAGCCACAACAACAACCAATGCAACTTCATCATCATCAGCAGCCGATAGCAGTGTCTCAACCATTGGGATGCAAGGACAACAAGGAGCAGCTCCTCAGTTGA 963 0.5348 MAQLPPKIPTIPQNWPSFPHQRVPSMANFNPTTSTTTATTTPPPPSWVDEFLDFSSARRGAHRRSASDSITFLEAPFLEECRAGFDRLDEDQLISMFSDDIAAASLPPPPPLSSASNPSSPASDQNSSEEKPMEMALDVKPKAETLEEESSYKDEEAAPQPSAIATCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQIYHQQNLQKMNNNLQQTTPTSQPQQQPMQLHHHQQPIAVSQPLGCKDNKEQLLS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02417 320 Coils Coil 254 274 - -
Gma13g02417 320 Gene3D - 174 228 - -
Gma13g02417 320 Pfam bZIP transcription factor 175 220 IPR004827 GO:0003700|GO:0006355
Gma13g02417 320 MobiDBLite consensus disorder prediction 280 320 - -
Gma13g02417 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 225 IPR004827 GO:0003700|GO:0006355
Gma13g02417 320 MobiDBLite consensus disorder prediction 280 302 - -
Gma13g02417 320 MobiDBLite consensus disorder prediction 102 164 - -
Gma13g02417 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Gma13g02417 320 SUPERFAMILY Leucine zipper domain 175 229 IPR046347 GO:0003700|GO:0006355
Gma13g02417 320 MobiDBLite consensus disorder prediction 14 44 - -
Gma13g02417 320 PANTHER BASIC LEUCINE ZIPPER 34 1 297 - -
Gma13g02417 320 MobiDBLite consensus disorder prediction 1 46 - -
Gma13g02417 320 PANTHER BASIC LEUCINE ZIPPER 2 1 297 - -
Gma13g02417 320 MobiDBLite consensus disorder prediction 131 155 - -
Gma13g02417 320 SMART brlzneu 171 235 IPR004827 GO:0003700|GO:0006355
Gma13g02417 320 CDD bZIP_plant_RF2 176 226 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02417 Gma-Chr13 38931117 38934174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02417 1 253 bZIP Transcription Factor Family AT3G58120 52.281 8.46e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gma13g02417 bZIP_1 9.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02417 - - gmx:100101884 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02417 13 38931117 38934174 Gma13g02417 13 38931117 38934174 ECH