Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02416 ATGAGCATGCTAAAATTTGCATTAAGAAATGTAGCAGCTGATGATGGCACGCATGTGATGGGCACAAACACAATAGGAGTTATTACAGACAACAAATCTCGCAACGGTAAAGAGGAGATAGTGGCAATTAAGATGGCATTGGAGGATTTCTATCAATATAGCAATCAAAACTTTGGTCTAGATCTTCAGATAAGGAACTCACATGGGGATCCCCTTCAGGCTGCTCTTGCAGCTAGAGATCTTATTGATACAAAGCACGTGGAAGCAATAATAGGACCCCAAACATGGGAAGAGACAACTTTGGTGGCTGACATTTGCAGCCAACACATGACACCGGttctatctctagctgatgcaactccaaactggtcaactttgaagtggccattccttgtgcaaGCCTCACCTAATCACTTTAAGCAGATGAAAGCAGTAGCAGCTATTGTTCATTCCTTTGGATGGTACGATGTTAACATAGTTTATGATGATAGGGATTCTTCATCCACAAGAATGTTATCTCATCTCTATAGAGCTCTAAGCAAAGCATGTGTGCAAATAAGCAATCTTTTGCCCATCCCATTAATTTCCTCTTCATTGTCCCAAGAACTTGAGAAGCTTAGAGAAGGTCATTGCAAAGTCTTTGTTGTTAATTTGTCCCTTTCTTTGGCCATAAACCTGTTTGAAACTGCAAAAAAATTGAACATGATGGAGAAAGGCTATGTGTGGATCATCACTGATCCTTTTACAAGTCTTGTCCATTCCTTGAAAGCATCCACTATATCCTCCATGCAAGGGATAATTGGAGTTAAGAGCTACTTCCCAGAAATAGGGGTTCAATATGAAGATTTCTACCTTAGATTTCGCCGAAAGTTTAGCTCAGAGAACCCTCAAGAATTTAACAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTTGCTCTAGCCATGACCCAAACCGACAATAAAGGTGGTCAAATTTTGCTAGACAACATTCTGCTTAACAACTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGACCAGAAGTTAGATCCTTCGAATACTTTTCAGATCACCAATGTGATAGGGAAAGGTTACAAGGAAGTGGGATTCTGGTCAGATGGACTAGGTTTCTCAAATAATATAGGCCAAAATGCTACTACTTTCAATTCTTCAATGAAAGAACTAGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAAATCCAAGAGGATGGACCCCGCCAACAAGTGATAAACCACTAAGAATTGGTGTCCCCGTTTTGGCCACATTGAAACAATTTATAAATGTGATTCAAGACCAAACTGAAAATACTAGCACCTTCCAAGGATTCACTATTGATCTTTTTAGATCAACTATGGAGTTGTTGCCCTATCATTTGCCATACAAATTCTACCCTTTCAATGACACATATGATAATTTGGTGAAGCAAGTCTATTTGAAGAATTTCGATGCAGTAATTGATGTGACAATAATCTCATATCGATATCAGTACGCAGAATTCACTCAGCCATACACTGATCCGGGAGTGGTGATGGTAGTCCCACTTAAATCAAAATTAGCACATAGAACTTGGTTATTTATGAAACCTTATACAAAGACTATGTGGGCTCTAATATTGGCCATGATTATCTACAATGGCTTTATTCTATGGATGTTGGAAAGACGCCACAATCCTGAAATTAGAGGTTCCATGTTGAATCAAACTGGGAGCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGGGACAGGTTACACAGCAATTTATCAAAGATGGCTATGGTGGTTTGGTTGTTTGTGGTACTCATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCTACCATAGATGATATCGATCAGCTACGGAATAGCAACATCAAGGTTGGATATGGTACAGGATCCTTTTTGAAAAATTATGTGCAGAAAGTGTTACAGTTCCACCCTGCAAACATGAGGCACTTTGGAGCACTTGAAGAGTATGCTGAAGCTCTCAGAAGGAAACAAATAGGAGCTGCCTTTCTTGAAGTTCCTGCAGCCAAAATTTTCCTTGCGAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTATAAAATTGGAGGATTTGGATTTgcatttccaagggggtctccatttcttccaagtgtaaacaaagcccttctggatttatttgaaactggcagggtacGCACATCAACTATTGCTCTCTTGGTTTATGTTTTTCGCAGAAGTTATGCAAACCATGAAGAGAGAACAATATGGAGACTACCAATGATGATCATTGAACAATGTGGCCATGCAAAGAGGCGAATCTCAAGAAAAGTTAGTGATGTTACAGAAAGTCCTATGACCTCTCCAACCACACATGCTACTCCAACTCAAGTTTAA 2463 0.378 MSMLKFALRNVAADDGTHVMGTNTIGVITDNKSRNGKEEIVAIKMALEDFYQYSNQNFGLDLQIRNSHGDPLQAALAARDLIDTKHVEAIIGPQTWEETTLVADICSQHMTPVLSLADATPNWSTLKWPFLVQASPNHFKQMKAVAAIVHSFGWYDVNIVYDDRDSSSTRMLSHLYRALSKACVQISNLLPIPLISSSLSQELEKLREGHCKVFVVNLSLSLAINLFETAKKLNMMEKGYVWIITDPFTSLVHSLKASTISSMQGIIGVKSYFPEIGVQYEDFYLRFRRKFSSENPQEFNNEPGIFAARAYDAAWTLALAMTQTDNKGGQILLDNILLNNFTGLSGKIQFTDQKLDPSNTFQITNVIGKGYKEVGFWSDGLGFSNNIGQNATTFNSSMKELGQVLWPGRPWGNPRGWTPPTSDKPLRIGVPVLATLKQFINVIQDQTENTSTFQGFTIDLFRSTMELLPYHLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSKLAHRTWLFMKPYTKTMWALILAMIIYNGFILWMLERRHNPEIRGSMLNQTGSMAWLALTPLIKLDGDRLHSNLSKMAMVVWLFVVLIITQTYTANLASMLTAERLEPTIDDIDQLRNSNIKVGYGTGSFLKNYVQKVLQFHPANMRHFGALEEYAEALRRKQIGAAFLEVPAAKIFLAKYCKEFIQAGPLYKIGGFGFAFPRGSPFLPSVNKALLDLFETGRVRTSTIALLVYVFRRSYANHEERTIWRLPMMIIEQCGHAKRRISRKVSDVTESPMTSPTTHATPTQV 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02416 820 Pfam Receptor family ligand binding region 42 367 IPR001828 -
Gma13g02416 820 SMART GluR_14 427 757 IPR001320 GO:0015276|GO:0016020
Gma13g02416 820 Gene3D - 137 378 - -
Gma13g02416 820 PANTHER GLUTAMATE RECEPTOR 18 755 - -
Gma13g02416 820 PANTHER GLUTAMATE RECEPTOR 756 814 - -
Gma13g02416 820 MobiDBLite consensus disorder prediction 802 820 - -
Gma13g02416 820 CDD PBP1_GABAb_receptor_plant 25 387 IPR044440 -
Gma13g02416 820 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 755 - -
Gma13g02416 820 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 756 814 - -
Gma13g02416 820 SUPERFAMILY Periplasmic binding protein-like II 403 754 - -
Gma13g02416 820 Pfam Ligand-gated ion channel 545 701 IPR001320 GO:0015276|GO:0016020
Gma13g02416 820 Gene3D - 31 359 - -
Gma13g02416 820 Gene3D - 423 536 - -
Gma13g02416 820 PIRSF IGluLR_plant 1 776 IPR017103 -
Gma13g02416 820 CDD GluR_Plant 424 753 - -
Gma13g02416 820 MobiDBLite consensus disorder prediction 800 820 - -
Gma13g02416 820 Pfam Bacterial extracellular solute-binding proteins, family 3 450 754 IPR001638 -
Gma13g02416 820 Gene3D - 537 674 - -
Gma13g02416 820 SUPERFAMILY Periplasmic binding protein-like I 24 417 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02416 Gma-Chr13 38923636 38928507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02416 25 748 Ion Channels AT2G29110 33.952 1.58e-136 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02416 - - gmx:100799573 1391.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02416 13 38923636 38928507 Gma13g02416 13 38923636 38928507 ECH