Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02414 ATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACGTGGCGCGCGTGGAGAAGATCGAACAGGATAGTAGGAACAACGTGAAGGTGCGTGTGAGGTGGTATTATAGGCCTGAAGAGTCTATTGGAGGACGCAGGCAGTTCCATGGAGCAAAGGAACTGTTTTTGTCTGACCATTATGATGTTCAGAGTGCTCACACAATTGAAGGGAAGTGTATTGTGCACTCTTTCAAGAATTATACCAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGGTTTGAGTACAAAGCTGCCACTGGGGCTTTCACGCCTGACCGTGTTGCTGTGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAACATTTTGTTTGTTCAGAATGTTCATCTGATGATGACATGAAGAAACCCCATGCTACATTTTCTGTATCACCAGGATCTGATGTCAAGGTTGAGCCAAAGCGGCGGAAGAGATGA 651 0.4762 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDSRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDDDMKKPHATFSVSPGSDVKVEPKRRKR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02414 216 PANTHER BNAC03G64850D PROTEIN 3 212 IPR045205 GO:0006325|GO:0035064
Gma13g02414 216 Pfam PHD-finger 140 188 IPR019787 -
Gma13g02414 216 SMART BAH_4 21 136 IPR001025 GO:0003682
Gma13g02414 216 PANTHER OS08G0421900 PROTEIN 3 212 - -
Gma13g02414 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Gma13g02414 216 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Gma13g02414 216 MobiDBLite consensus disorder prediction 187 216 - -
Gma13g02414 216 SMART PHD_3 140 187 IPR001965 -
Gma13g02414 216 Gene3D - 2 132 IPR043151 -
Gma13g02414 216 CDD BAH_BAHCC1 22 156 - -
Gma13g02414 216 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Gma13g02414 216 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Gma13g02414 216 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Gma13g02414 216 Pfam BAH domain 23 135 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02414 Gma-Chr13 38901491 38904806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02414 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 2.03e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma13g02414 BAH 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02414 K25868 - gmx:100810424 457.988