Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02409 ATGGTGAGAGGAAGCGGAGGGGAGATAGTTCAAGTTGAAGGCGGTCACATTGTGCGCTCCACAGGGCGGAAGGACCGTCACAGCAAAGTGTGCACCGCCAAAGGCCCTCGTGACCGACGGGTGAGGTTATCGGCCCACACCGCCATCCAATTCTACGACGTCCAGGACCGCTTGGGCTACGACCGCCCCAGCAAGGCCGTCGACTGGCTCATCAACAAGGCCAAGTCCTCCATCGACCAACTCGCCCACCTCCCTCCCTGGAAACCCACTCTCCCCTCACCCGCACCACCTCATCTAAACGACGACCATTCAGACAAACCTaaccctaaccccaaccccaaccccaaccccaaccccaaccccaaccATAGCCCTGATGCCCAAATTCTCAACCAGTTCGACCACGACGATGGAGCTGGAGCTGGTTCCAGTTATCTTCCTATGGATAACGACGCGATAAGGTCGTTCTTCCCCACGACGACTTCCTCGTTGGTTCAATTCCAGAGCTACCCACCGGATTTGCTCTCCAGAACCAGTAGCCAGGACCTGCGTCTCTCGCTTCAGTCCTTGCAAGACCCTATTTTACTTCACCACAACCACAACAACAACGAGCACGTGCTTTTCGCTGGAACCGCCTTTGATAACATGGTAGCGTGGaataataatagtaataataatcataataataataatcataataataataataataataataataatactgcttctaatgatacttgtggtgGTGGTGGTGGTGGAGGAGGAGGAGGAGGGTTTGTGTTTAACGCTCCTTCGACTTTGCCGGGGCCGGCGACGGTGGCGTCGCCGACGGTGGTGTTTGGTCATGGTTATGGTCAAGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAGCCCTTCCGTTCGTGCGTGGATTGACGCGCCATCGTTCGTCGCTGCTGCCGCCGATCATCGGCATCATCACTATCTGTCTCCCGCGGCAGCGGCAGCGGCGTTGGTGTATCAGTCTGCTCCTTCCACGGCGGCATTTACGGCGGCGCCCGGTGGCTTCTCGGGATTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAGCACGACGGCGGCATGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGTTGA 1161 0.5159 MVRGSGGEIVQVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSSIDQLAHLPPWKPTLPSPAPPHLNDDHSDKPNPNPNPNPNPNPNPNHSPDAQILNQFDHDDGAGAGSSYLPMDNDAIRSFFPTTTSSLVQFQSYPPDLLSRTSSQDLRLSLQSLQDPILLHHNHNNNEHVLFAGTAFDNMVAWNNNSNNNHNNNNHNNNNNNNNNTASNDTCGGGGGGGGGGGFVFNAPSTLPGPATVASPTVVFGHGYGQGQYFSQRGPLQSSNSPSVRAWIDAPSFVAAAADHRHHHYLSPAAAAAALVYQSAPSTAAFTAAPGGFSGFRVPARIQGEEEHDGGMSDKPSSASSDSRR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02409 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 385 IPR005333 GO:0003700
Gma13g02409 386 MobiDBLite consensus disorder prediction 362 386 - -
Gma13g02409 386 Pfam TCP family transcription factor 22 84 IPR017887 -
Gma13g02409 386 MobiDBLite consensus disorder prediction 1 37 - -
Gma13g02409 386 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Gma13g02409 386 MobiDBLite consensus disorder prediction 18 37 - -
Gma13g02409 386 PANTHER TRANSCRIPTION FACTOR TCP4 2 385 - -
Gma13g02409 386 MobiDBLite consensus disorder prediction 360 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02409 Gma-Chr13 38857883 38859043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02409 4 385 TCP Transcription Factor Family AT1G53230 45.316 4.13e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma13g02409 TCP 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02409 - - gmx:100796938 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02144 12 42284457 42286237 Gma13g02409 13 38857883 38859043 ECH
Gma12g01482 12 29278343 29280277 Gma13g02409 13 38857883 38859043 ECH
Gma06g02556 06 48751635 48753217 Gma13g02409 13 38857883 38859043 ECH
Gma12g01968 12 40274720 40277166 Gma13g02409 13 38857883 38859043 ECH
Gma13g02588 13 40739512 40740927 Gma13g02409 13 38857883 38859043 ECH
Gma13g02409 13 38857883 38859043 Gma06g02556 06 48751635 48753217 ECH
Gma13g02409 13 38857883 38859043 Gma13g02409 13 38857883 38859043 ECH