Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02406 ATGGAGTCACCATTCAAGCCCATCTCATGCACCAGAAAAACTCCATACAGAATTGAAACCAAGAACTTGTCATACAAGTTGTGCAGCCAGCTTGATGAGTGTAGAAGCCTTTGTTTTGGTTCCAATCCGGGGAGAGGTGCCAAGTTCATTTTGAAGGATGTGAATTGTGAGGCAAGGCCAGGGGAGATTACTGCTATTGCTGGCCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATTCTTGCTGGCAGAATACCACCATGTAATAAAGTGTCTGGCCATGTTCTTGTCAATCATAGGCCTATGGATGTGAACCAATTTAGAAGGACATCAGGGTATGTCACGCAAGATGATGCTTTGTTCCCATCACTGACAGTTAGAGAGACACTCATGTATAGTGCCATGCTGAGGCTTCCCGGGGGAAGAAAAGTTGCTGCCATCAGAGTTGAAGATTTGATGAAGGAGCTTGGATTGGACCACATTGCAGATTCAAGAATTGGAGGTGGATCAGACCACAGCATATCCGGCGGTGAAAGGCGTAGAGTTTCCATTGGTGTCGACTTGGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGCTGGATTCAGCATCAGCTCTTAGTGTGGTCTCATTGCTTAGGCTTGTGGCATTTAACCAACGTAAGACAATTATTTTAACCATCCACCAACCTGGTTTCCGAATCCTGGAGCTATTTGATGGCCTCATTTTGCTGTCTGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAGGCTAGGCTTAAGTTAGCCGGGCACCACATTCCTGACCATGTCAATGTCCTCGAGTTTGCTCTTGATGTCATGGAATGCTTGGTTATACACACTTCAGAATCTGAGGACAACCAGTTTCTGCTCAAAGAGAACCAAGATCACAGAATGAGGATGCAGTACTCTAAGGTGGTGAAAGAAAAGGCACTTATGTACTCAAATTCTCCAATGGAGGAGATTTCAATCCTAGGACAAAGATTTTGCTGCAACATATTCAGAACCAAGCAACTCTTTGTCACCAGGGTCATGCAAGCCTTAGTAGCTGGTTTTATTCTTGGGAGCATATTTTTCAATGTTGGCAGTCAACAAAGTCATGTGGCATTGCAAACTAGAAGCGGCTTCTTTGCTTTCAGCCTTACCTTTTTGCTATCATCAACAACAGAAGGCTTGCCTATTTTCTTGGAGGAGAGAAGAACTTTTATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTTTAGCAAACACCCTTGTGTTCCTTCCTTTCCTTCTATTGGTTGGTCTTCTGTATTCTACTCCAGTGTATTGGCTTGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTACTCATGTCGAATTCTCTTGTGGCTTGTTTCAGCGCTCTAGTGCCAAATTTCATCCTCGGAACCTCAGTGATTGCAGGTCTAATGGGGTCTTTCTTTCTGTTCTCAGGGTATTTCATATCAGAGGAAAAAATACCAAGTTACTGGATTTTTATGCACTATTTGAGCCTTTTCAAGTATCCATTTGAGTGCCTTGTGATAAATGAGTATGGACGAGAGCAAGGGAAAATGAGATGCTTAGAAATTAGCAATGGAAAATGCATACTATATGGAGCTGAATTCTTAAGACAACAGGGTCTGAGAGATTCACAAAAATGGACCAATTTGGCTGTAATGTTGAGCTTCATAGTGGGGTATAGAGTGCTTAGCTTTATTATTCTTTGGTTCAGATGTTACAGGACCAGAAAATAG 1836 0.4259 MESPFKPISCTRKTPYRIETKNLSYKLCSQLDECRSLCFGSNPGRGAKFILKDVNCEARPGEITAIAGPSGAGKTTLLEILAGRIPPCNKVSGHVLVNHRPMDVNQFRRTSGYVTQDDALFPSLTVRETLMYSAMLRLPGGRKVAAIRVEDLMKELGLDHIADSRIGGGSDHSISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALSVVSLLRLVAFNQRKTIILTIHQPGFRILELFDGLILLSDGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMECLVIHTSESEDNQFLLKENQDHRMRMQYSKVVKEKALMYSNSPMEEISILGQRFCCNIFRTKQLFVTRVMQALVAGFILGSIFFNVGSQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSRGAYRVSSYVLANTLVFLPFLLLVGLLYSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLVINEYGREQGKMRCLEISNGKCILYGAEFLRQQGLRDSQKWTNLAVMLSFIVGYRVLSFIILWFRCYRTRK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02406 611 Pfam ABC transporter 51 202 IPR003439 GO:0005524
Gma13g02406 611 Gene3D - 17 275 IPR027417 -
Gma13g02406 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 603 - -
Gma13g02406 611 Pfam ABC-2 type transporter 334 545 IPR013525 GO:0016020|GO:0140359
Gma13g02406 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 1 603 - -
Gma13g02406 611 CDD ABCG_EPDR 41 257 - -
Gma13g02406 611 Pfam ABC-2 type transporter 232 299 IPR043926 GO:0140359
Gma13g02406 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 267 IPR027417 -
Gma13g02406 611 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524
Gma13g02406 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 275 IPR003439 GO:0005524
Gma13g02406 611 SMART AAA_5 60 252 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02406 Gma-Chr13 38814891 38816730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02406 41 258 Calmodulin-binding Proteins AT2G36910 25.221 3.27e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02406 K05681 - gmx:100807754 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02406 13 38814891 38816730 Gma13g02406 13 38814891 38816730 ECH